Evidence map›Paper›PMID 28951478›Full record

ArticlemBio2017

Structural Basis for EarP-Mediated Arginine Glycosylation of Translation Elongation Factor EF-P.

Ralph Krafczyk, Jakub Macošek, Pravin Kumar Ankush Jagtap, Daniel Gast, Swetlana Wunder, Prithiba Mitra, Amit Kumar Jha, Jürgen Rohr, Anja Hoffmann-Röder, Kirsten Jung and 2 more

Abstract read
In one paragraph

Article in mBio, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Science advances · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Bacteria-Catalyzed Arginine Glycosylation in Pathogens and Host.Frontiers in cellular and infection microbiology · 2020
    Review
  12. Complex Structure ofJournal of bacteriology · 2019
    Article
  13. Article
  14. Structural basis for the glycosyltransferase activity of theThe Journal of biological chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ralph KrafczykCenter for integrated Protein Science Munich (CiPSM), Department of Biology I, Microbiology, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID 0000-0001-6171-6086
Jakub MacošekStructural and Computational Biology Unit, EMBL Heidelberg, Heidelberg, Germany.
Pravin Kumar Ankush JagtapStructural and Computational Biology Unit, EMBL Heidelberg, Heidelberg, Germany.ORCID 0000-0002-9457-4130
Daniel GastCenter for integrated Protein Science Munich (CiPSM), Department of Chemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Swetlana WunderCenter for integrated Protein Science Munich (CiPSM), Department of Chemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Prithiba MitraUniversity of Kentucky College of Pharmacy, Lexington, Kentucky, USA.ORCID 0000-0002-0677-9030
Amit Kumar JhaUniversity of Kentucky College of Pharmacy, Lexington, Kentucky, USA.
Jürgen RohrUniversity of Kentucky College of Pharmacy, Lexington, Kentucky, USA.ORCID 0000-0001-6447-5951
Anja Hoffmann-RöderCenter for integrated Protein Science Munich (CiPSM), Department of Chemistry, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID 0000-0002-8352-8323
Kirsten JungCenter for integrated Protein Science Munich (CiPSM), Department of Biology I, Microbiology, Ludwig-Maximilians-Universität München, Munich, Germany.ORCID 0000-0003-0779-6841
Janosch HennigStructural and Computational Biology Unit, EMBL Heidelberg, Heidelberg, Germany janosch.hennig@embl.de juergen.lassak@lmu.de.ORCID 0000-0001-5214-7002
Jürgen LassakCenter for integrated Protein Science Munich (CiPSM), Department of Biology I, Microbiology, Ludwig-Maximilians-Universität München, Munich, Germany janosch.hennig@embl.de juergen.lassak@lmu.de.ORCID 0000-0003-3936-3389

Funding

Exploring Post-Type II PKS Frame ModificationsR01GM105977 · NIGMS · UNIVERSITY OF KENTUCKY · PI ROHR, JURGEN T · 2014 to 2017
$1.1M
NIGMS NIH HHS R01 GM105977
6 · The paper itself

Abstract

Glycosylation is a universal strategy to posttranslationally modify proteins. The recently discovered arginine rhamnosylation activates the polyproline-specific bacterial translation elongation factor EF-P. EF-P is rhamnosylated on arginine 32 by the glycosyltransferase EarP. However, the enzymatic mechanism remains elusive. In the present study, we solved the crystal structure of EarP from

Indexed as

Amino Acid SequenceArginineBacterial ProteinsGlycosylationGlycosyltransferasesModels, MolecularPeptide Elongation FactorsProtein BiosynthesisProtein Processing, Post-TranslationalPseudomonas aeruginosaPseudomonas putidaRibosomesArginineBacterial Proteinsfactor EF-PGlycosyltransferasesPeptide Elongation Factorsglycosylationglycosyltransferasenucleotide sugarposttranslational modificationPseudomonas aeruginosaPseudomonas putidaribosomesTDP-rhamnosetranslation

Identifiers

PMID28951478
PMCPMC5615199

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.