ArticleWellcome open research2016
SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.
Article in Wellcome open research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation.Bioinformatics advances · 2026Review
- Lit-OTAR framework for extracting biological evidences from literature.Bioinformatics (Oxford, England) · 2025Article
- EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024.Nucleic acids research · 2025Article
- BioTextQuest v2.0: An evolved tool for biomedical literature mining and concept discovery.Computational and structural biotechnology journal · 2024Article
- Europe PMC in 2023.Nucleic acids research · 2024Article
- Article
- Europe PMC annotated full-text corpus for gene/proteins, diseases and organisms.Scientific data · 2023Article
- COVoc and COVTriage: novel resources to support literature triage.Bioinformatics (Oxford, England) · 2023Article
- Cognitive analysis of metabolomics data for systems biology.Nature protocols · 2021Article
- Europe PMC in 2020.Nucleic acids research · 2021Article
- SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts.Nucleic acids research · 2020Article
- The articles.ELM resource: simplifying access to protein linear motif literature by annotation, text-mining and classification.Database : the journal of biological databases and curation · 2020Article
- The Cytoscape BioGateway App: explorative network building from the BioGateway triple store.Bioinformatics (Oxford, England) · 2019Article
- Automatic annotation of protein residues in published papers.Acta crystallographica. Section F, Structural biology communications · 2019Article
- PubTator central: automated concept annotation for biomedical full text articles.Nucleic acids research · 2019Article
- Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry.Analytical chemistry · 2019Article
- The European Bioinformatics Institute in 2018: tools, infrastructure and training.Nucleic acids research · 2019Article
- Annotation and detection of drug effects in text for pharmacovigilance.Journal of cheminformatics · 2018Article
- Europe PMC in 2017.Nucleic acids research · 2018Article
- Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt.Database : the journal of biological databases and curation · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors.
Funding
Abstract
The tremendous growth in biological data has resulted in an increase in the number of research papers being published. This presents a great challenge for scientists in searching and assimilating facts described in those papers. Particularly, biological databases depend on curators to add highly precise and useful information that are usually extracted by reading research articles. Therefore, there is an urgent need to find ways to improve linking literature to the underlying data, thereby minimising the effort in browsing content and identifying key biological concepts. As part of the development of Europe PMC, we have developed a new platform, SciLite, which integrates text-mined annotations from different sources and overlays those outputs on research articles. The aim is to aid researchers and curators using Europe PMC in finding key concepts more easily and provide links to related resources or tools, bridging the gap between literature and biological data.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.