Evidence map›Paper›PMID 28947819›Full record

ArticleScientific reports2017

A dual targeted β-defensin and exome sequencing approach to identify, validate and functionally characterise genes associated with bull fertility.

Ronan Whiston, Emma K Finlay, Matthew S McCabe, Paul Cormican, Paul Flynn, Andrew Cromie, Peter J Hansen, Alan Lyons, Sean Fair, Patrick Lonergan and 2 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 38 citations in OpenAlex.

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  10. Selection for bull fertility: a review.Translational animal science · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Ronan WhistonAnimal & Bioscience Research Department, Animal & Grassland Research and Innovation Centre, Teagasc, Grange, Co. Meath, Ireland.
Emma K FinlayAnimal & Bioscience Research Department, Animal & Grassland Research and Innovation Centre, Teagasc, Grange, Co. Meath, Ireland.
Matthew S McCabeAnimal & Bioscience Research Department, Animal & Grassland Research and Innovation Centre, Teagasc, Grange, Co. Meath, Ireland.
Paul CormicanAnimal & Bioscience Research Department, Animal & Grassland Research and Innovation Centre, Teagasc, Grange, Co. Meath, Ireland.
Paul FlynnWeatherbys Scientific, Johnstown, Naas, Co Kildare, Ireland.
Andrew CromieIrish Cattle Breeding Federation, Bandon, Co. Cork, Ireland.
Peter J HansenDepartment of Animal Sciences, University of Florida, Gainesville, Florida, USA.
Alan LyonsDepartment of Biological Sciences, University of Limerick, Limerick, Ireland.
Sean FairDepartment of Biological Sciences, University of Limerick, Limerick, Ireland.
Patrick LonerganSchool of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, Ireland.
Cliona O' FarrellyTrinity Biomedical Sciences Institute, Trinity College, Dublin 2, Ireland.
Kieran G MeadeAnimal & Bioscience Research Department, Animal & Grassland Research and Innovation Centre, Teagasc, Grange, Co. Meath, Ireland. kieran.meade@teagasc.ie.
Teagasc - The Irish Agriculture and Food Development Authority · IEUniversity of Limerick · IEIrish Equine Centre · IETrinity College Dublin · IEUniversity College Dublin · IEUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bovine fertility remains a critical issue underpinning the sustainability of the agricultural sector. Phenotypic records collected on >7,000 bulls used in artificial insemination (AI) were used to identify 160 reliable and divergently fertile bulls for a dual strategy of targeted sequencing (TS) of fertility-related β-defensin genes and whole exome sequencing (WES). A haplotype spanning multiple β-defensin genes and containing 94 SNPs was significantly associated with fertility and functional analysis confirmed that sperm from bulls possessing the haplotype showed significantly enhanced binding to oviductal epithelium. WES of all exons in the genome in 24 bulls of high and low fertility identified 484 additional SNPs significantly associated with fertility. After validation, the most significantly associated SNP was located in the FOXJ3 gene, a transcription factor which regulates sperm function in mice. This study represents the first comprehensive characterisation of genetic variation in bovine β-defensin genes and functional analysis supports a role for β-defensins in regulating bull sperm function. This first application of WES in AI bulls with divergent fertility phenotypes has identified a novel role for the transcription factor FOXJ3 in the regulation of bull fertility. Validated genetic variants associated with bull fertility could prove useful for improving reproductive outcomes in cattle.

Indexed as

Animal HusbandryAnimalsbeta-DefensinsBiomarkersBreedingCattleExome SequencingFemaleFertilityForkhead Transcription FactorsInsemination, ArtificialMalePolymorphism, Single NucleotideSpermatozoabeta-DefensinsBiomarkersForkhead Transcription Factors

Identifiers

PMID28947819
PMCPMC5613009
OpenAlexW2756365536

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.