Evidence map›Paper›PMID 28947760›Full record

ArticleScientific reports2017

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.

Anaïs Gouin, Anthony Bretaudeau, Kiwoong Nam, Sylvie Gimenez, Jean-Marc Aury, Bernard Duvic, Frédérique Hilliou, Nicolas Durand, Nicolas Montagné, Isabelle Darboux and 55 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
17.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 370 citations in OpenAlex.

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65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

65 authors at 20 institutions in 9 countries.

Anaïs GouinINRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.
Anthony BretaudeauINRA, UMR Institut de Génétique, Environnement et Protection des Plantes (IGEPP), BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, 35042, France.
Kiwoong NamDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Sylvie GimenezDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Jean-Marc AuryCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.ORCID 0000-0003-1718-3010
Bernard DuvicDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Frédérique HilliouUniversité Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.
Nicolas DurandSorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.ORCID 0000-0002-3613-2609
Nicolas MontagnéSorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.
Isabelle DarbouxDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Suyog KuwarDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.ORCID 0000-0001-8055-596X
Thomas ChertempsSorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.
David SiaussatSorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.
Anne BretschneiderDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.
Yves MonéDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Seung-Joon AhnDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.
Sabine HännigerDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.ORCID 0000-0001-8758-3568
Anne-Sophie Gosselin GrenetDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
David NeunemannDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.
Florian MaumusURGI, INRA, Université Paris-Saclay, 78026, Versailles, France.
Isabelle LuytenURGI, INRA, Université Paris-Saclay, 78026, Versailles, France.
Karine LabadieCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.
Wei XuSchool of Veterinary and Life Sciences, Murdoch University, Murdoch, 6150, Australia.
Fotini KoutroumpaINRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.
Jean-Michel EscoubasDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Angel LlopisDepartment of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.
Martine Maïbèche-CoisneSorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.
Fanny SalascDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.ORCID 0000-0002-6574-1358
Archana TomarLaboratory of Mammalian Genetics, Center for DNA Fingerprinting and Diagnostics (CDFD), Lab block: Tuljaguda (Opp. MJ Market), Nampally, Hyderabad, 500 001, India.
Alisha R AndersonCSIRO Ecosystem Sciences, Black Mountain, Canberra, ACT 2600, Australia.
Sher Afzal KhanDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.
Pascaline DumasInstitute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Science Park 904, 1090 GE, Amsterdam, The Netherlands.
Marion OrsucciDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Julie GuyCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.
Caroline BelserCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.ORCID 0000-0002-8108-9910
Adriana AlbertiCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.ORCID 0000-0003-3372-9423
Benjamin NoelCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.
Arnaud CoulouxCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.
Jonathan MercierCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.
Sabine NideletPlateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.
Emeric DuboisPlateforme MGX, C/o institut de Génomique Fonctionnelle, 141, rue de la Cardonille, 34094, Montpellier cedex 05, France.ORCID 0000-0002-6052-4178
Nai-Yong LiuKey Laboratory of Forest Disaster Warning and Control of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.
Isabelle BoulogneSorbonne Universités, UPMC University Paris 06, Institute of Ecology and Environmental Sciences of Paris, 75005, Paris, France.ORCID 0000-0001-6810-6504
Olivier MirabeauINRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.
Gaelle Le GoffUniversité Côte d'Azur, INRA, CNRS, Institut Sophia Agrobiotech, 06903 Sophia-Antipolis, France.ORCID 0000-0003-1973-7136
Karl GordonCSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.
John OakeshottCSIRO, Clunies Ross St, (GPO Box 1700), Acton, ACT 2601, Australia.
Fernando L ConsoliDepartamento de Entomologia e Acarologia, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Av. Pádua Dias 11, 13418-900, Piracicaba, Brazil.ORCID 0000-0002-2287-0782
Anne-Nathalie VolkoffDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Howard W FescemyerDepartment of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.
James H MardenDepartment of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.
Dawn S LutheDepartment of Plant Science, 102 Tyson Building, The Pennsylvania State University, University Park, 16802, Pennsylvania, USA.
Salvador HerreroDepartment of Genetics, Universitat de València, 46100, Burjassot, Valencia, Spain.ORCID 0000-0001-5690-2108
David G HeckelDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.
Patrick WinckerCEA, Genoscope, 2 rue Gaston Crémieux, 91000, Evry, France.
Gael J KergoatINRA, UMR1062 CBGP, IRD, CIRAD, Montpellier SupAgro, 755 Avenue du campus Agropolis, 34988, Montferrier/Lez, France.
Joelle AmselemURGI, INRA, Université Paris-Saclay, 78026, Versailles, France.
Hadi QuesnevilleURGI, INRA, Université Paris-Saclay, 78026, Versailles, France.ORCID 0000-0003-3001-4908
Astrid T GrootDepartment of Entomology, Max Planck Institute for Chemical Ecology, D-07745, Jena, Germany.
Emmanuelle Jacquin-JolyINRA, Institute of Ecology and Environmental Sciences, 78000, Versailles, France.
Nicolas NègreDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. Nicolas.Negre@univ-montp2.fr.ORCID 0000-0001-9727-3416
Claire LemaitreINRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France. claire.lemaitre@inria.fr.ORCID 0000-0001-8675-170X
Fabrice LegeaiINRIA, IRISA, GenScale, Campus de Beaulieu, Rennes, 35042, France.
Emmanuelle d'AlençonDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France. emmanuelle.d-alencon@inra.fr.ORCID 0000-0001-8994-0119
Philippe FournierDGIMI, INRA, Univ. Montpellier, 34095, Montpellier, France.
Université de Montpellier · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRMax Planck Institute for Chemical Ecology · DESorbonne Université · FRUniversité Paris-Saclay · FRCentre National de la Recherche Scientifique · FRCommonwealth Scientific and Industrial Research Organisation · AUInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRPennsylvania State University · USAgroParisTech · FRInstitut de Génomique Fonctionnelle · FRInstitut de Recherche en Informatique et Systèmes Aléatoires · FRInstitut national de recherche en sciences et technologies du numérique · FRUniversitat de València · ESCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRCentre for DNA Fingerprinting and Diagnostics · INÉcole Pratique des Hautes Études · FRMurdoch University · AUNaturalis Biodiversity Center · NLSouthwest Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Emergence of polyphagous herbivorous insects entails significant adaptation to recognize, detoxify and digest a variety of host-plants. Despite of its biological and practical importance - since insects eat 20% of crops - no exhaustive analysis of gene repertoires required for adaptations in generalist insect herbivores has previously been performed. The noctuid moth Spodoptera frugiperda ranks as one of the world's worst agricultural pests. This insect is polyphagous while the majority of other lepidopteran herbivores are specialist. It consists of two morphologically indistinguishable strains ("C" and "R") that have different host plant ranges. To describe the evolutionary mechanisms that both enable the emergence of polyphagous herbivory and lead to the shift in the host preference, we analyzed whole genome sequences from laboratory and natural populations of both strains. We observed huge expansions of genes associated with chemosensation and detoxification compared with specialist Lepidoptera. These expansions are largely due to tandem duplication, a possible adaptation mechanism enabling polyphagy. Individuals from natural C and R populations show significant genomic differentiation. We found signatures of positive selection in genes involved in chemoreception, detoxification and digestion, and copy number variation in the two latter gene families, suggesting an adaptive role for structural variation.

Indexed as

Genome, InsectHerbivoryAdaptation, PhysiologicalAnimalsCrops, AgriculturalLarvaSpecies SpecificitySpodoptera

Identifiers

PMID28947760
PMCPMC5613006
OpenAlexW2756293157

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.