Evidence map›Paper›PMID 28947656›Full record

ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2017

Structural aspects of the inactive X chromosome.

Giancarlo Bonora, Christine M Disteche

Open access · hybridAbstract readReview
In one paragraph

Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Cells · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Satellite DNAs and human sex chromosome variation.Seminars in cell & developmental biology · 2022
    Review
  13. Article
  14. X-chromosome regulation and sex differences in brain anatomy.Neuroscience and biobehavioral reviews · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. From Human Cytogenetics to Human Chromosomics.International journal of molecular sciences · 2019
    Review
  20. X Inactivation and Escape: Epigenetic and Structural Features.Frontiers in cell and developmental biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Giancarlo BonoraDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.ORCID http://orcid.org/0000-0001-7558-3798
Christine M DistecheDepartment of Pathology, University of Washington, Seattle, WA 98195, USA cdistech@u.washington.edu.ORCID http://orcid.org/0000-0002-5433-495X
University of Washington · US

Funding

University of Washington Center for Nuclear Organization and FunctionU54DK107979 · NIDDK · UNIVERSITY OF WASHINGTON · PI NOBLE, WILLIAM STAFFORD, SHENDURE, JAY ASHOK · 2015 to 2019
$11.8M
Mouse X InactivationR01GM046883 · NIGMS · UNIVERSITY OF WASHINGTON · PI DISTECHE, CHRISTINE M. · 1992 to 2018
$5.9M
NIDDK NIH HHS U54 DK107979NIGMS NIH HHS R01 GM046883
6 · The paper itself

Abstract

A striking difference between male and female nuclei was recognized early on by the presence of a condensed chromatin body only in female cells. Mary Lyon proposed that X inactivation or silencing of one X chromosome at random in females caused this structural difference. Subsequent studies have shown that the inactive X chromosome (Xi) does indeed have a very distinctive structure compared to its active counterpart and all autosomes in female mammals. In this review, we will recap the discovery of this fascinating biological phenomenon and seminal studies in the field. We will summarize imaging studies using traditional microscopy and super-resolution technology, which revealed uneven compaction of the Xi. We will then discuss recent findings based on high-throughput sequencing techniques, which uncovered the distinct three-dimensional bipartite configuration of the Xi and the role of specific long non-coding RNAs in eliciting and maintaining this structure. The relative position of specific genomic elements, including genes that escape X inactivation, repeat elements and chromatin features, will be reviewed. Finally, we will discuss the position of the Xi, either near the nuclear periphery or the nucleolus, and the elements implicated in this positioning.This article is part of the themed issue 'X-chromosome inactivation: a tribute to Mary Lyon'.

Indexed as

AnimalsChromatinChromosomes, Human, XFemaleHigh-Throughput Nucleotide SequencingHumansMiceRNA, Long NoncodingX ChromosomeX Chromosome InactivationChromatinRNA, Long NoncodingchromatinnucleusX chromosomeX inactivation

Identifiers

PMID28947656
PMCPMC5627159
OpenAlexW2758354260

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.