Evidence map›Paper›PMID 28947655›Full record

ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2017

Mechanistic insights in X-chromosome inactivation.

Zhipeng Lu, Ava C Carter, Howard Y Chang

Abstract readReview
In one paragraph

Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 72 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Xist in X chromosome inactivation: mechanisms and disease relevance.Cell communication and signaling : CCS · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. NDP-related retinopathies: clinical phenotype of female carriers.The British journal of ophthalmology · 2023
    Article
  10. Review
  11. Identification of a Novel Frameshift Variant ofJournal of clinical medicine · 2023
    Article
  12. Article
  13. Article
  14. The Role of Transposable Elements in Sexual Development.Frontiers in behavioral neuroscience · 2022
    Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Gene regulation by long non-coding RNAs and its biological functions.Nature reviews. Molecular cell biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Zhipeng LuCenter for Dynamic Personal Regulomes, Stanford University, Stanford, CA 94305, USA.ORCID http://orcid.org/0000-0001-5124-7546
Ava C CarterCenter for Dynamic Personal Regulomes, Stanford University, Stanford, CA 94305, USA.
Howard Y ChangCenter for Dynamic Personal Regulomes, Stanford University, Stanford, CA 94305, USA howchang@stanford.edu.ORCID http://orcid.org/0000-0002-9459-4393
Google (United States) · US

Funding

Special EquipmentP50HG007735 · NHGRI · STANFORD UNIVERSITY · PI WONG, WING H. · 2014 to 2018
$15.2M
Structural Motifs in RNAR01HG004361 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2007 to 2018
$4.7M
Decoding the RNA Structurome: Method Development and Function Analysis.R00HG009662 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LU, ZHIPENG · 2019 to 2021
$821k
Decoding the RNA structurome: method development and function analysisK99HG009662 · NHGRI · STANFORD UNIVERSITY · PI LU, ZHIPENG · 2017 to 2018
$149k
NHGRI NIH HHS K99 HG009662NHGRI NIH HHS P50 HG007735NHGRI NIH HHS R00 HG009662NHGRI NIH HHS R01 HG004361
6 · The paper itself

Abstract

X-chromosome inactivation (XCI) is a critical epigenetic mechanism for balancing gene dosage between XY males and XX females in eutherian mammals. A long non-coding RNA (lncRNA), XIST, and its associated proteins orchestrate this multi-step process, resulting in the inheritable silencing of one of the two X-chromosomes in females. The XIST RNA is large and complex, exemplifying the unique challenges associated with the structural and functional analysis of lncRNAs. Recent technological advances in the analysis of macromolecular structure and interactions have enabled us to systematically dissect the XIST ribonucleoprotein complex, which is larger than the ribosome, and its place of action, the inactive X-chromosome. These studies shed light on key mechanisms of XCI, such as XIST coating of the X-chromosome, recruitment of DNA, RNA and histone modification enzymes, and compaction and compartmentalization of the inactive X. Here, we summarize recent studies on XCI, highlight the critical contributions of new technologies and propose a unifying model for XIST function in XCI where modular domains serve as the structural and functional units in both lncRNA-protein complexes and DNA-protein complexes in chromatin.This article is part of the themed issue 'X-chromosome inactivation: a tribute to Mary Lyon'.

Indexed as

X Chromosome InactivationAnimalsChromatinChromosomes, Human, XFemaleHumansMiceModels, GeneticRNA, Long NoncodingX ChromosomeChromatinRNA, Long NoncodinginteractomemodularityRNA structure domainstopological associating domainsX-chromosome inactivationXIST

Identifiers

PMID28947655
PMCPMC5627158
OpenAlexW2758467943

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.