Evidence map›Paper›PMID 28945316›Full record

ReviewTraffic (Copenhagen, Denmark)2017

Diatrack particle tracking software: Review of applications and performance evaluation.

Pascal Vallotton, Antoine M van Oijen, Cynthia B Whitchurch, Vladimir Gelfand, Leslie Yeo, Georgios Tsiavaliaris, Stephanie Heinrich, Elisa Dultz, Karsten Weis, David Grünwald

Abstract readReview
In one paragraph

Review in Traffic (Copenhagen, Denmark), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pascal VallottonInstitute of Biochemistry, ETH Zürich, Zürich, Switzerland.ORCID 0000-0002-4159-1447
Antoine M van OijenFaculty of Science Medicine and Health, University of Wollongong, Wollongong, Australia.
Cynthia B WhitchurchFaculty of Health, University of Technology Sydney, Sydney, Australia.
Vladimir GelfandDepartment of Cell and Molecular Biology, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Leslie YeoCivil, Environmental and Chemical Engineering, RMIT University, Melbourne, Australia.
Georgios TsiavaliarisMedizinische Hochschule Hannover, Hannover, Germany.
Stephanie HeinrichInstitute of Biochemistry, ETH Zürich, Zürich, Switzerland.
Elisa DultzInstitute of Biochemistry, ETH Zürich, Zürich, Switzerland.
Karsten WeisInstitute of Biochemistry, ETH Zürich, Zürich, Switzerland.
David GrünwaldRNA Therapeutics Institute and Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts.

Funding

REGULATION OF MYOSIN DRIVEN ORGANELLE TRANSPORTR01GM052111 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GELFAND, VLADIMIR I · 1999 to 2018
$8.3M
NIGMS NIH HHS R01 GM052111
6 · The paper itself

Abstract

Object tracking is an instrumental tool supporting studies of cellular trafficking. There are three challenges in object tracking: the identification of targets; the precise determination of their position and boundaries; and the assembly of correct trajectories. This last challenge is particularly relevant when dealing with densely populated images with low signal-to-noise ratios-conditions that are often encountered in applications such as organelle tracking, virus particle tracking or single-molecule imaging. We have developed a set of methods that can handle a wide variety of signal complexities. They are compiled into a free software package called Diatrack. Here we review its main features and utility in a range of applications, providing a survey of the dynamic imaging field together with recommendations for effective use. The performance of our framework is shown to compare favorably to a wide selection of custom-developed algorithms, whether in terms of localization precision, processing speed or correctness of tracks.

Indexed as

AlgorithmsSingle Molecule ImagingSoftwareHumansMicroscopy, FluorescenceProtein Transportbiological imagingcell trackingdynamic imaginglive cell imagingorganelle trackingparticle trackingsingle moleculesuper-resolutionvesicle tracking

Identifiers

PMID28945316
PMCPMC5677553

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.