Evidence map›Paper›PMID 28945067›Full record

ArticleACS chemical biology2017

Intertwined Precursor Supply during Biosynthesis of the Catecholate-Hydroxamate Siderophores Qinichelins in Streptomyces sp. MBT76.

Jacob Gubbens, Changsheng Wu, Hua Zhu, Dmitri V Filippov, Bogdan I Florea, Sébastien Rigali, Herman S Overkleeft, Gilles P van Wezel

Abstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  11. Cloning and Overexpression of theFrontiers in microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jacob GubbensLeiden Institute of Chemistry, Leiden University , Einsteinweg 55, 2333 CC Leiden, The Netherlands.
Changsheng WuMolecular Biotechnology, Institute of Biology, Leiden University , Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Hua ZhuMolecular Biotechnology, Institute of Biology, Leiden University , Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Dmitri V FilippovLeiden Institute of Chemistry, Leiden University , Einsteinweg 55, 2333 CC Leiden, The Netherlands.
Bogdan I FloreaLeiden Institute of Chemistry, Leiden University , Einsteinweg 55, 2333 CC Leiden, The Netherlands.
Sébastien RigaliInBioS, Centre for Protein Engineering, University of Liège , Liège, B-4000, Belgium.
Herman S OverkleeftLeiden Institute of Chemistry, Leiden University , Einsteinweg 55, 2333 CC Leiden, The Netherlands.ORCID 0000-0001-6976-7005
Gilles P van WezelMolecular Biotechnology, Institute of Biology, Leiden University , Sylviusweg 72, 2333 BE, Leiden, The Netherlands.ORCID 0000-0003-0341-1561

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The explosive increase in genome sequencing and the advances in bioinformatic tools have revolutionized the rationale for natural product discovery from actinomycetes. In particular, this has revealed that actinomycete genomes contain numerous orphan gene clusters that have the potential to specify many yet unknown bioactive specialized metabolites, representing a huge unexploited pool of chemical diversity. Here, we describe the discovery of a novel group of catecholate-hydroxamate siderophores termed qinichelins (2-5) from Streptomyces sp. MBT76. Correlation between the metabolite levels and the protein expression profiles identified the biosynthetic gene cluster (named qch) most likely responsible for qinichelin biosynthesis. The structure of the molecules was elucidated by bioinformatics, mass spectrometry, and NMR. The genome of Streptomyces sp. MBT76 contains three gene clusters for the production of catecholate-peptide siderophores, including a separate cluster for the production of a shared catecholate precursor. In addition, an operon in the qch cluster was identified for the production of the ornithine precursor for qinichelins, independent of primary metabolism. This biosynthetic complexity provides new insights into the challenges scientists face when applying synthetic biology approaches for natural product discovery.

Indexed as

Biosynthetic PathwaysCatecholsGenome, BacterialHydroxamic AcidsMultigene FamilyOligopeptidesSiderophoresStreptomycesCatecholsHydroxamic AcidsOligopeptidesSiderophores

Identifiers

PMID28945067
PMCPMC5696649

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.