Evidence map›Paper›PMID 28944404›Full record

ArticleSupportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer2018

Differential expression of genes and differentially perturbed pathways associated with very high evening fatigue in oncology patients receiving chemotherapy.

Elena Flowers, Christine Miaskowski, Yvette Conley, Marilyn J Hammer, Jon Levine, Judy Mastick, Steven Paul, Fay Wright, Kord Kober

Abstract read
In one paragraph

Article in Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Impact of worst pain severity and morning fatigue profiles on oncology outpatients' symptom burden and quality of life.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2022
    Article
  7. The State of Data Science in Genomic Nursing.Biological research for nursing · 2020
    Review
  8. Article
  9. Article
  10. Chemotherapy-induced fatigue is associated with changes in gene expression in the peripheral blood mononuclear cell fraction of patients with locoregional breast cancer.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2019
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Elena FlowersDepartment of Physiological Nursing, University of California, San Francisco, 2 Koret Way, #605L, San Francisco, CA, 94143-0610, USA. elena.flowers@ucsf.edu.ORCID http://orcid.org/0000-0002-7054-7533
Christine MiaskowskiDepartment of Physiological Nursing, University of California, San Francisco, 2 Koret Way, #605L, San Francisco, CA, 94143-0610, USA.
Yvette ConleySchool of Nursing, University of Pittsburgh, Pittsburgh, PA, USA.
Marilyn J HammerMount Sinai Medical Center, New York, NY, USA.
Jon LevineSchool of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Judy MastickDepartment of Physiological Nursing, University of California, San Francisco, 2 Koret Way, #605L, San Francisco, CA, 94143-0610, USA.
Steven PaulDepartment of Physiological Nursing, University of California, San Francisco, 2 Koret Way, #605L, San Francisco, CA, 94143-0610, USA.
Fay WrightSchool of Nursing, Yale University, Orange, CT, USA.
Kord KoberDepartment of Physiological Nursing, University of California, San Francisco, 2 Koret Way, #605L, San Francisco, CA, 94143-0610, USA.
University of California, San Francisco · USMount Sinai Medical Center · USUniversity of Pittsburgh · USYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Clinical and Transtional Science InstituteKL2TR000143 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$11.9M
Symptoms Clusters in Oncology Patients Receiving ChemotherapyR01CA134900 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AOUIZERAT, BRADLEY E, MIASKOWSKI, CHRISTINE A. · 2009 to 2014
$5.9M
Research Training: Self and Family ManagementT32NR008346 · NINR · YALE UNIVERSITY · PI GREY, MARGARET · 2003 to 2018
$4.7M
Symptom Management After Breast Cancer SurgeryR01CA107091 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MIASKOWSKI, CHRISTINE A. · 2003 to 2008
$4.5M
Advancing the Science of Symptom Management in Oncology PatientsK05CA168960 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MIASKOWSKI, CHRISTINE A. · 2013 to 2017
$453k
National Cancer Institute K05CA168960National Cancer Institute R01CA134900National Center for Advancing Translational Sciences KL2TR000143National Institute of Nursing Research T32NR008346NCATS NIH HHS KL2 TR000143NCATS NIH HHS UL1 TR001863NCI NIH HHS K05 CA168960NCI NIH HHS R01 CA107091NCI NIH HHS R01 CA134900NINR NIH HHS T32 NR008346
6 · The paper itself

Abstract

purposeFatigue is the most common symptom associated with cancer and its treatment. Investigation of molecular mechanisms associated with fatigue in oncology patients may identify new therapeutic targets. The objectives of this study were to evaluate the relationships between gene expression and perturbations in biological pathways and evening fatigue severity in oncology patients who received chemotherapy (CTX).

methodsThe Lee Fatigue Scale (LFS) and latent class analysis were used to identify evening fatigue phenotypes. We measured 47,214 ribonucleic acid transcripts from whole blood collected prior to a cycle of CTX. Perturbations in biological pathways associated with differential gene expression were identified from public data sets (i.e., Kyoto Encyclopedia Gene and Genomes, BioCarta).

resultsPatients were classified into Moderate (n = 65, mean LFS score 3.1) or Very High (n = 195, mean LFS score 6.4) evening fatigue groups. Compared to patients with Moderate fatigue, patients with Very High fatigue exhibited differential expression of 29 genes. A number of the perturbed pathways identified validated prior mechanistic hypotheses for fatigue, including alterations in immune function, inflammation, neurotransmission, energy metabolism, and circadian rhythms. Based on our findings, energy metabolism was further divided into alterations in carbohydrate metabolism and skeletal muscle energy. Alterations in renal function-related pathways were identified as a potential new mechanism.

conclusionsThis study identified differential gene expression and perturbed biological pathways that provide new insights into the multiple and likely inter-related mechanisms associated with evening fatigue in oncology patients.

Indexed as

FatigueFemaleGene ExpressionHumansLongitudinal StudiesMaleMiddle AgedNeoplasmsCancerChemotherapyFatigueGene expressionPathway analysis

Identifiers

PMID28944404
PMCPMC5786467
OpenAlexW2759580604

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.