Evidence map›Paper›PMID 28943314›Full record

ArticleMolecular cell2017

The Chd1 Chromatin Remodeler Shifts Nucleosomal DNA Bidirectionally as a Monomer.

Yupeng Qiu, Robert F Levendosky, Srinivas Chakravarthy, Ashok Patel, Gregory D Bowman, Sua Myong

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Molecular Acrobats: How CHD Remodelers Shape the Genetic Playground to License Cell Identity.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. How does CHD4 slide nucleosomes?Biochemical Society transactions · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Pioneer Factor Improves CRISPR-Based C-To-G and C-To-T Base Editing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Multicolor single-molecule FRET for DNA and RNA processes.Current opinion in structural biology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Yupeng QiuDepartment of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA; Department of Bioengineering, University of Illinois, Urbana, IL 61801, USA.
Robert F LevendoskyDepartment of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA.
Srinivas ChakravarthyBiophysics Collaborative Access Team, Argonne National Laboratory, Argonne, IL 60439, USA.
Ashok PatelKusuma School of Biological Sciences, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India.
Gregory D BowmanDepartment of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA. Electronic address: gdbowman@jhu.edu.
Sua MyongDepartment of Biophysics, Johns Hopkins University, Baltimore, MD 21218, USA; Department of Bioengineering, University of Illinois, Urbana, IL 61801, USA; Physics Frontier Center (Center for Physics of Living Cells), University of Illinois, Urbana, IL 61801, USA. Electronic address: smyong@jhu.edu.
Johns Hopkins University · USArgonne National Laboratory · USIndian Institute of Technology Delhi · IN

Funding

CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Structural and Functional Characterization of the Chd1 Chromatin RemodelerR01GM084192 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BOWMAN, GREGORY DEAN · 2008 to 2024
$6.3M
Quantitative Stepwise Analysis of RNA InterferenceDP2GM105453 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MYONG, SUA · 2012 to 2012
$2.4M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
Acquisition of Sony Biotechnology iCyt Synergy SY3200 BSC Cell SorterS10OD016230 · OD · JOHNS HOPKINS UNIVERSITY · PI MCCAFFERY, J. MICHAEL · 2014 to 2014
$520k
NIGMS NIH HHS DP2 GM105453NIGMS NIH HHS P41 GM103622NIGMS NIH HHS R01 GM084192NIGMS NIH HHS T32 GM007231NIH HHS S10 OD016230NIH HHS S10 OD018090
6 · The paper itself

Abstract

Chromatin remodelers catalyze dynamic packaging of the genome by carrying out nucleosome assembly/disassembly, histone exchange, and nucleosome repositioning. Remodeling results in evenly spaced nucleosomes, which requires probing both sides of the nucleosome, yet the way remodelers organize sliding activity to achieve this task is not understood. Here, we show that the monomeric Chd1 remodeler shifts DNA back and forth by dynamically alternating between different segments of the nucleosome. During sliding, Chd1 generates unstable remodeling intermediates that spontaneously relax to a pre-remodeled position. We demonstrate that nucleosome sliding is tightly controlled by two regulatory domains: the DNA-binding domain, which interferes with sliding when its range is limited by a truncated linking segment, and the chromodomains, which play a key role in substrate discrimination. We propose that active interplay of the ATPase motor with the regulatory domains may promote dynamic nucleosome structures uniquely suited for histone exchange and chromatin reorganization during transcription.

Indexed as

Transcription, GeneticAmino Acid SequenceAnimalsBinding SitesChromatin Assembly and DisassemblyCloning, MolecularDNADNA-Binding ProteinsEscherichia coliGene ExpressionHistonesModels, MolecularNucleosomesPlasmidsProtein BindingProtein Conformation, alpha-HelicalCHD1 protein, S cerevisiaeDNADNA-Binding ProteinsHistonesNucleosomesRecombinant ProteinsSaccharomyces cerevisiae Proteinsasymmetricbi-directionalChd1chromatin remodelingchromo domainhexasomelinker domainnucleosome repositioningrepetitive movementsingle molecule FRET

Identifiers

PMID28943314
PMCPMC5745159
OpenAlexW2756786203

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.