Evidence map›Paper›PMID 28943090›Full record

ArticleCurrent biology : CB2017

Genome Architecture and Evolution of a Unichromosomal Asexual Nematode.

Hélène Fradin, Karin Kiontke, Charles Zegar, Michelle Gutwein, Jessica Lucas, Mikhail Kovtun, David L Corcoran, L Ryan Baugh, David H A Fitch, Fabio Piano and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
19.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 76 citations in OpenAlex.

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  12. Comparative genomics ofbioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Hélène FradinDepartment of Biology, New York University, New York, NY 10003, USA; Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Karin KiontkeDepartment of Biology, New York University, New York, NY 10003, USA.
Charles ZegarCenter for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Michelle GutweinCenter for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Jessica LucasCenter for Genomics and Systems Biology, New York University, New York, NY 10003, USA.
Mikhail KovtunDuke Center for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA.
David L CorcoranDuke Center for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA.
L Ryan BaughDepartment of Biology, Duke University, Durham, NC 27708, USA.
David H A FitchDepartment of Biology, New York University, New York, NY 10003, USA. Electronic address: david.fitch@nyu.edu.
Fabio PianoDepartment of Biology, New York University, New York, NY 10003, USA; Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA; Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates. Electronic address: fp1@nyu.edu.
Kristin C GunsalusDepartment of Biology, New York University, New York, NY 10003, USA; Center for Genomics and Systems Biology, New York University, New York, NY 10003, USA; Center for Genomics and Systems Biology, New York University Abu Dhabi, Abu Dhabi, United Arab Emirates. Electronic address: kcg1@nyu.edu.
New York University · USDuke University · USNew York University Abu Dhabi · AE

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Systemic, maternal and transgenerational effects of nutrient stressR01GM117408 · NIGMS · DUKE UNIVERSITY · PI BAUGH, LARRY RYAN · 2015 to 2022
$2.5M
Architecture of a Genetic Network Governing MorphogenesisR01GM100140 · NIGMS · NEW YORK UNIVERSITY · PI FITCH, DAVID H. A. · 2012 to 2015
$1.1M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NIGMS NIH HHS R01 GM100140NIGMS NIH HHS R01 GM117408NIH HHS P40 OD010440NIH HHS S10 OD018164
6 · The paper itself

Abstract

Asexual reproduction in animals, though rare, is the main or exclusive mode of reproduction in some long-lived lineages. The longevity of asexual clades may be correlated with the maintenance of heterozygosity by mechanisms that rearrange genomes and reduce recombination. Asexual species thus provide an opportunity to gain insight into the relationship between molecular changes, genome architecture, and cellular processes. Here we report the genome sequence of the parthenogenetic nematode Diploscapter pachys with only one chromosome pair. We show that this unichromosomal architecture is shared by a long-lived clade of asexual nematodes closely related to the genetic model organism Caenorhabditis elegans. Analysis of the genome assembly reveals that the unitary chromosome arose through fusion of six ancestral chromosomes, with extensive rearrangement among neighboring regions. Typical nematode telomeres and telomeric protection-encoding genes are lacking. Most regions show significant heterozygosity; homozygosity is largely concentrated to one region and attributed to gene conversion. Cell-biological and molecular evidence is consistent with the absence of key features of meiosis I, including synapsis and recombination. We propose that D. pachys preserves heterozygosity and produces diploid embryos without fertilization through a truncated meiosis. As a prelude to functional studies, we demonstrate that D. pachys is amenable to experimental manipulation by RNA interference.

Indexed as

Evolution, MolecularGenome, HelminthReproduction, AsexualAnimalsRhabditoideaWhole Genome Sequencingasexual reproductionchromosome fusionDiploscapter pachysevolutiongenome sequencemeiosisnematodeparthenogenesisProtorhabditis grouptelomere

Identifiers

PMID28943090
PMCPMC5659720
OpenAlexW2754596117

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.