Evidence map›Paper›PMID 28942967›Full record

ArticleAmerican journal of human genetics2017

De Novo Mutations in PPP3CA Cause Severe Neurodevelopmental Disease with Seizures.

Candace T Myers, Nicholas Stong, Emily I Mountier, Katherine L Helbig, Saskia Freytag, Joseph E Sullivan, Bruria Ben Zeev, Andreea Nissenkorn, Michal Tzadok, Gali Heimer and 19 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 67 citations in OpenAlex.

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  15. A cellular atlas of calcineurin signaling.Biochimica et biophysica acta. Molecular cell research · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Case report: A novelFrontiers in neurology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 15 institutions in 5 countries.

Candace T MyersDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Nicholas StongInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY 10032, USA.
Emily I MountierDepartment of Paediatrics and Child Health, University of Otago, Wellington 6242, New Zealand.
Katherine L HelbigAmbry Genetics, Aliso Viejo, CA 92656, USA.
Saskia FreytagThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia; Department of Medical Biology, The University of Melbourne, Parkville, VIC 3050, Australia.
Joseph E SullivanDepartment of Neurology & Pediatrics, University of California, San Francisco, San Francisco, CA 94143, USA.
Bruria Ben ZeevSheba Medical Center, Ramat Gan, Israel, Sackler School of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel.
Andreea NissenkornSheba Medical Center, Ramat Gan, Israel, Sackler School of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel.
Michal TzadokSheba Medical Center, Ramat Gan, Israel, Sackler School of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel.
Gali HeimerSheba Medical Center, Ramat Gan, Israel, Sackler School of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel.
Deepali N ShindeAmbry Genetics, Aliso Viejo, CA 92656, USA.
Arezoo RezazadehDivision of Neurology, Epilepsy Genetics Research Program, Toronto Western Hospital, Krembil Neuroscience Centre, University of Toronto, Toronto, ON M5T 2S8, Canada.
Brigid M ReganDivision of Neurology, Epilepsy Genetics Research Program, Toronto Western Hospital, Krembil Neuroscience Centre, University of Toronto, Toronto, ON M5T 2S8, Canada.
Karen L OliverThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia; Epilepsy Research Centre, Department of Medicine, Austin Health, The University of Melbourne, Heidelberg, VIC 3084, Australia.
Michelle E ErnstInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY 10032, USA.
Natalie C LippaInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY 10032, USA.
Maureen S MulhernInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY 10032, USA.
Zhong RenInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY 10032, USA.
Annapurna PoduriEpilepsy Genetics Program, Department of Neurology, Boston Children's Hospital and Department of Neurology, Harvard Medical School, Boston, MA 02115, USA.
Danielle M AndradeDivision of Neurology, Epilepsy Genetics Research Program, Toronto Western Hospital, Krembil Neuroscience Centre, University of Toronto, Toronto, ON M5T 2S8, Canada.
Lynne M BirdDepartment of Pediatrics, University of California, San Diego, San Diego, CA 92037, USA; Rady Children's Hospital, San Diego, CA 92037, USA.
Melanie BahloThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC 3052, Australia; Department of Medical Biology, The University of Melbourne, Parkville, VIC 3050, Australia.
Samuel F BerkovicEpilepsy Research Centre, Department of Medicine, Austin Health, The University of Melbourne, Heidelberg, VIC 3084, Australia.
Daniel H LowensteinDepartment of Neurology, University of California, San Francisco, San Francisco, CA 94143, USA.
Ingrid E SchefferEpilepsy Research Centre, Department of Medicine, Austin Health, The University of Melbourne, Heidelberg, VIC 3084, Australia; Florey Institute of Neuroscience and Mental Health, The University of Melbourne, Parkville, VIC 3010, Australia; Department of Paediatrics, Royal Children's Hospital, The University of Melbourne, Parkville, VIC 3050, Australia.
Lynette G SadleirDepartment of Paediatrics and Child Health, University of Otago, Wellington 6242, New Zealand.
David B GoldsteinInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY 10032, USA.
Heather C MeffordDivision of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA 98195, USA. Electronic address: hmefford@uw.edu.
Erin L HeinzenInstitute for Genomic Medicine, Columbia University Medical Center, New York, NY 10032, USA; Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY 10032, USA. Electronic address: eh2682@cumc.columbia.edu.
Columbia University Irving Medical Center · USAmbry Genetics (United States) · USAustin Health · AUSheba Medical Center · ILTel Aviv University · ILUniversity of California, San Francisco · USUniversity of Otago · NZUniversity of Toronto · CAUniversity of Washington · USHarvard University · USRoyal Children's Hospital · AUToronto Western Hospital · CAUniversity of California, San Diego · USUniversity of Melbourne · AUWalter and Eliza Hall Institute of Medical Research · AU

Funding

The Epilepsy Phenome/ Genome Project (EPGP)U01NS053998 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LOWENSTEIN, DANIEL H · 2007 to 2013
$26.4M
3 of 7 Epi4K: Sequencing, Biostatistics & Bioinformatics CoreU01NS077303 · NINDS · DUKE UNIVERSITY · PI EICHLER, EVAN, GOLDSTEIN, DAVID B. · 2011 to 2018
$13.3M
Intellectual and Developmental Disabilities Research CenterU54HD083091 · NICHD · UNIVERSITY OF WASHINGTON · PI GURALNICK, MICHAEL J · 2014 to 2019
$7.9M
A Genomic Approach to EpilepsyR01NS069605 · NINDS · UNIVERSITY OF WASHINGTON · PI MEFFORD, HEATHER C. · 2010 to 2019
$4.9M
NICHD NIH HHS U54 HD083091NINDS NIH HHS R01 NS069605NINDS NIH HHS U01 NS053998NINDS NIH HHS U01 NS077303
6 · The paper itself

Abstract

Exome sequencing has readily enabled the discovery of the genetic mutations responsible for a wide range of diseases. This success has been particularly remarkable in the severe epilepsies and other neurodevelopmental diseases for which rare, often de novo, mutations play a significant role in disease risk. Despite significant progress, the high genetic heterogeneity of these disorders often requires large sample sizes to identify a critical mass of individuals with disease-causing mutations in a single gene. By pooling genetic findings across multiple studies, we have identified six individuals with severe developmental delay (6/6), refractory seizures (5/6), and similar dysmorphic features (3/6), each harboring a de novo mutation in PPP3CA. PPP3CA encodes the alpha isoform of a subunit of calcineurin. Calcineurin encodes a calcium- and calmodulin-dependent serine/threonine protein phosphatase that plays a role in a wide range of biological processes, including being a key regulator of synaptic vesicle recycling at nerve terminals. Five individuals with de novo PPP3CA mutations were identified among 4,760 trio probands with neurodevelopmental diseases; this is highly unlikely to occur by chance (p = 1.2 × 10

Indexed as

MutationAdolescentAdultCalcineurinChildChild, PreschoolCohort StudiesEpilepsyExomeFemaleHumansInfantInfant, NewbornLennox Gastaut SyndromeMaleNeurodevelopmental DisordersCalcineurinPPP3CA protein, humancalcineurinde novo mutationdevelopmental and epileptic encephalopathyepilepsyPPP3CA

Identifiers

PMID28942967
PMCPMC5630160
OpenAlexW2759618212

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.