Evidence map›Paper›PMID 28942966›Full record

ArticleAmerican journal of human genetics2017

Haploinsufficiency of the Chromatin Remodeler BPTF Causes Syndromic Developmental and Speech Delay, Postnatal Microcephaly, and Dysmorphic Features.

Paweł Stankiewicz, Tahir N Khan, Przemyslaw Szafranski, Leah Slattery, Haley Streff, Francesco Vetrini, Jonathan A Bernstein, Chester W Brown, Jill A Rosenfeld, Surya Rednam and 29 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 3 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 3 syntheses or guidelines pooled it, 113 citations in OpenAlex.

  1. Pooled it
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  10. Genome-wide association study of adolescent-onset depression.medRxiv : the preprint server for health sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 17 institutions in 6 countries.

Paweł StankiewiczDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA. Electronic address: pawels@bcm.edu.
Tahir N KhanCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA.
Przemyslaw SzafranskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Leah SlatteryDepartment of Pediatrics, Division of Medical Genetics, Stanford University, Stanford, CA 94305, USA.
Haley StreffDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Francesco VetriniBaylor Genetics, Houston, TX 77021, USA.
Jonathan A BernsteinDepartment of Pediatrics, Division of Medical Genetics, Stanford University, Stanford, CA 94305, USA.
Chester W BrownUniversity of Tennessee Health Science Center, Memphis, TN 38163, USA; Le Bonheur Children's Hospital, Memphis, TN 38105, USA.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA.
Surya RednamTexas Children's Hospital, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Cancer Center, Texas Children's Hospital, Houston, TX 77030, USA.
Sarah ScollonTexas Children's Hospital, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Cancer Center, Texas Children's Hospital, Houston, TX 77030, USA.
Katie L BergstromTexas Children's Hospital, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Cancer Center, Texas Children's Hospital, Houston, TX 77030, USA.
Donald W ParsonsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Cancer Center, Texas Children's Hospital, Houston, TX 77030, USA.
Sharon E PlonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Cancer Center, Texas Children's Hospital, Houston, TX 77030, USA.
Marta W VieiraPUCSP, Faculdade de Ciências Médicas e da Saúde, São Paulo 01221-020, Brazil.
Caio R D C QuaioFleury Medicina e Saúde, São Paulo 04344-070, Brazil.
Wagner A R BaratelaFleury Medicina e Saúde, São Paulo 04344-070, Brazil.
Johanna C Acosta GuioEspecialista en Genética Médica, Instituto de Ortopedia Infantil Roosevelt, 17-50 Bogotá, Cundinamarca, Colombia.
Ruth ArmstrongEast Anglian Medical Genetics Service, Clinical Genetics, Addenbrooke's Treatment Centre, Addenbrooke's Hospital, Cambridge CB2 0QQ, UK.
Sarju G MehtaEast Anglian Medical Genetics Service, Clinical Genetics, Addenbrooke's Treatment Centre, Addenbrooke's Hospital, Cambridge CB2 0QQ, UK.
Patrick RumpDepartment of Genetics, University of Groningen, University Medical Center Groningen, 9700 AB Groningen, the Netherlands.
Rolph PfundtDepartment of Human Genetics, Radboud University Medical Center, 6500 HB Nijmegen, the Netherlands.
Raymond LewandowskiVirginia Commonwealth University, Richmond, VA 23298, USA.
Erica M FernandesVirginia Commonwealth University, Richmond, VA 23298, USA.
Deepali N ShindeDepartment of Clinical Genomics, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Sha TangDepartment of Clinical Genomics, Ambry Genetics, Aliso Viejo, CA 92656, USA.
Juliane HoyerInstitute of Human Genetics, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen 91054, Germany.
Christiane ZweierInstitute of Human Genetics, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen 91054, Germany.
André ReisInstitute of Human Genetics, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen 91054, Germany.
Carlos A BacinoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA.
Rui XiaoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA.
Amy M BremanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA.
Janice L SmithDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA.
Deciphering Developmental Disorders Study
Nicholas KatsanisCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA.
Bret BostwickDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Bernt PoppInstitute of Human Genetics, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen 91054, Germany.
Erica E DavisCenter for Human Disease Modeling, Duke University Medical Center, Durham, NC 27701, USA.
Yaping YangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Baylor Genetics, Houston, TX 77021, USA. Electronic address: yapingy@bcm.edu.
Baylor College of Medicine · USBaylor Genetics · USFriedrich-Alexander-Universität Erlangen-Nürnberg · DEChildren's Cancer Center · USAddenbrooke's Hospital · GBAmbry Genetics (United States) · USDuke University Hospital · USFleury S.A. (Brazil) · BRStanford University · USTexas Children's Hospital · USVirginia Commonwealth University · USCasa del Niño Hospital Infantil · CODuke Medical Center · USLe Bonheur Children's Hospital · USPontifícia Universidade Católica de São Paulo · BRRadboud University Medical Center · NLUniversity of Groningen · NL

Funding

Measuring Perceptions of Utility of Clinical Genome Sequencing: Instrument Testing and ValidationU01HG006485 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI MCGUIRE, AMY L, PARSONS, DONALD W. · 2012 to 2021
$22.1M
Functional Dissection of CNVs in Neurodevelopmental TraitsR01MH106826 · NIMH · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI DAVIS, ERICA ELLEN · 2015 to 2025
$4.6M
NHGRI NIH HHS U01 HG006485NIMH NIH HHS R01 MH106826Wellcome Trust
6 · The paper itself

Abstract

Bromodomain PHD finger transcription factor (BPTF) is the largest subunit of nucleosome remodeling factor (NURF), a member of the ISWI chromatin-remodeling complex. However, the clinical consequences of disruption of this complex remain largely uncharacterized. BPTF is required for anterior-posterior axis formation of the mouse embryo and was shown to promote posterior neuroectodermal fate by enhancing Smad2-activated wnt8 expression in zebrafish. Here, we report eight loss-of-function and two missense variants (eight de novo and two of unknown origin) in BPTF on 17q24.2. The BPTF variants were found in unrelated individuals aged between 2.1 and 13 years, who manifest variable degrees of developmental delay/intellectual disability (10/10), speech delay (10/10), postnatal microcephaly (7/9), and dysmorphic features (9/10). Using CRISPR-Cas9 genome editing of bptf in zebrafish to induce a loss of gene function, we observed a significant reduction in head size of F0 mutants compared to control larvae. Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) and phospho-histone H3 (PH3) staining to assess apoptosis and cell proliferation, respectively, showed a significant increase in cell death in F0 mutants compared to controls. Additionally, we observed a substantial increase of the ceratohyal angle of the craniofacial skeleton in bptf F0 mutants, indicating abnormal craniofacial patterning. Taken together, our data demonstrate the pathogenic role of BPTF haploinsufficiency in syndromic neurodevelopmental anomalies and extend the clinical spectrum of human disorders caused by ablation of chromatin remodeling complexes.

Indexed as

Gene Expression Regulation, DevelopmentalAbnormalities, MultipleAdolescentAnimalsAntigens, NuclearBromodomain Containing ProteinsCell ProliferationCells, CulturedChildChild, PreschoolChromatin Assembly and DisassemblyCohort StudiesCraniofacial AbnormalitiesCRISPR-Cas SystemsFemaleGene EditingAntigens, NuclearBromodomain Containing Proteinsfetal Alzheimer antigenNerve Tissue ProteinsTranscription Factors17q24.2 deletionhead sizeintellectual disabilityPSMD12zebrafish

Identifiers

PMID28942966
PMCPMC5630163
OpenAlexW2759095162

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.