Evidence map›Paper›PMID 28942923›Full record

ArticleCell2017

Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.

Anirban Paul, Megan Crow, Ricardo Raudales, Miao He, Jesse Gillis, Z Josh Huang

Abstract read
In one paragraph

Article in Cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 279 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
279citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

279 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Cortical control of chandelier cells in neural codes.Frontiers in cellular neuroscience · 2022
    Pooled it
  3. Article
  4. Article
  5. Parvalbumin interneurons under stress: converging mechanisms of vulnerability.The international journal of neuropsychopharmacology · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. An emerging role for synaptic ZnPharmacology & therapeutics · 2026
    Review
  12. Glutamate Delta 1 Receptor in Synapses, Circuits, and Disease.The European journal of neuroscience · 2026
    Review
  13. Article
  14. The Highly Localized Interaction between Neurofascin-186 and Gliomedin Promotes Subcellular Innervation by the Chandelier Cell.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
  15. Article
  16. Review
  17. Article
  18. Hippocampal Chandelier Cells Modulate Seizure Susceptibility and Severity.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  19. Impact of Prenatal Alcohol Exposure on Cerebral Cortex Development.Advances in experimental medicine and biology · 2026
    Review
  20. Review

219 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anirban PaulCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Megan CrowCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Ricardo RaudalesCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Program in Neuroscience, Stony Brook University, Stony Brook, NY 11790, USA.
Miao HeCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Jesse GillisCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Z Josh HuangCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA. Electronic address: huangj@cshl.edu.

Funding

Genetic analysis of chandelier cells during cortical circuit assemblyR01MH094705 · NIMH · DUKE UNIVERSITY · PI HUANG, Z JOSH · 2011 to 2022
$5.8M
Transcriptome-based systematic discovery of GABAergic neurons in the neocortexR01MH109665 · NIMH · DUKE UNIVERSITY · PI HUANG, Z JOSH · 2016 to 2020
$4.0M
Cell-based genomic analysis of molecular pathology in Mouse Models of Rett SyndromeR01MH102616 · NIMH · COLD SPRING HARBOR LABORATORY · PI HUANG, Z JOSH · 2014 to 2018
$3.8M
Revealing the transcriptomic basis of neuronal identity through functional meta-analysisR01MH113005 · NIMH · COLD SPRING HARBOR LABORATORY · PI GILLIS, JESSE · 2017 to 2021
$2.4M
Meta-analysis to define neuronal diversity: from genes to functions across speciesF32MH114501 · NIMH · COLD SPRING HARBOR LABORATORY · PI CROW, MEGAN · 2017 to 2018
$111k
NIMH NIH HHS F32 MH114501NIMH NIH HHS R01 MH094705NIMH NIH HHS R01 MH102616NIMH NIH HHS R01 MH109665NIMH NIH HHS R01 MH113005
6 · The paper itself

Abstract

Understanding the organizational logic of neural circuits requires deciphering the biological basis of neuronal diversity and identity, but there is no consensus on how neuron types should be defined. We analyzed single-cell transcriptomes of a set of anatomically and physiologically characterized cortical GABAergic neurons and conducted a computational genomic screen for transcriptional profiles that distinguish them from one another. We discovered that cardinal GABAergic neuron types are delineated by a transcriptional architecture that encodes their synaptic communication patterns. This architecture comprises 6 categories of ∼40 gene families, including cell-adhesion molecules, transmitter-modulator receptors, ion channels, signaling proteins, neuropeptides and vesicular release components, and transcription factors. Combinatorial expression of select members across families shapes a multi-layered molecular scaffold along the cell membrane that may customize synaptic connectivity patterns and input-output signaling properties. This molecular genetic framework of neuronal identity integrates cell phenotypes along multiple axes and provides a foundation for discovering and classifying neuron types.

Indexed as

Gene Expression ProfilingSingle-Cell AnalysisAnimalsCell Adhesion Molecules, NeuronalExtracellular MatrixGABAergic Neuronsgamma-Aminobutyric AcidMiceReceptors, GABAReceptors, Ionotropic GlutamateSignal TransductionSynapsesTranscription, GeneticZincCell Adhesion Molecules, Neuronalgamma-Aminobutyric AcidReceptors, GABAReceptors, Ionotropic GlutamateZinccell typeco-expressionGABAergic interneuronsgene familyMetaNeighbornetwork analysisneuronal identitysingle-cell transcriptomessynaptic communicationtranscriptional architecture

Identifiers

PMID28942923
PMCPMC5772785

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.