Evidence map›Paper›PMID 28942919›Full record

ArticleCell2017

Organism-Level Analysis of Vaccination Reveals Networks of Protection across Tissues.

Motohiko Kadoki, Ashwini Patil, Cornelius C Thaiss, Donald J Brooks, Surya Pandey, Deeksha Deep, David Alvarez, Ulrich H von Andrian, Amy J Wagers, Kenta Nakai and 3 more

Abstract read
In one paragraph

Article in Cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Review
  2. Article
  3. Secreted phospholipase PLA2G5 acts as a hemolytic factor in sepsis.The Journal of clinical investigation · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Human sand fly challenge elicits saliva-specific innate and TbioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Primary nasal viral infection rewires the tissue-scale memory response.bioRxiv : the preprint server for biology · 2024
    Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Motohiko KadokiFaculty of Arts & Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.
Ashwini PatilHuman Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.
Cornelius C ThaissFaculty of Arts & Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.
Donald J BrooksFaculty of Arts & Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.
Surya PandeyFaculty of Arts & Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.
Deeksha DeepFaculty of Arts & Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA.
David AlvarezDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Ulrich H von AndrianDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Amy J WagersDepartment of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA.
Kenta NakaiHuman Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo 108-8639, Japan.
Tarjei S MikkelsenDepartment of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA.
Magali SoumillonDepartment of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138, USA.
Nicolas ChevrierFaculty of Arts & Sciences Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. Electronic address: nchevrier@uchicago.edu.

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
SPECIAL ASSAY COREP30DK036836 · NIDDK · JOSLIN DIABETES CENTER · PI JEAN E. SCHAFFER · 1986 to 2026
$50.5M
NIAID NIH HHS P30 AI060354
6 · The paper itself

Abstract

A fundamental challenge in immunology is to decipher the principles governing immune responses at the whole-organism scale. Here, using a comparative infection model, we observe immune signal propagation within and between organs to obtain a dynamic map of immune processes at the organism level. We uncover two inter-organ mechanisms of protective immunity mediated by soluble and cellular factors. First, analyzing ligand-receptor connectivity across tissues reveals that type I IFNs trigger a whole-body antiviral state, protecting the host within hours after skin vaccination. Second, combining parabiosis, single-cell analyses, and gene knockouts, we uncover a multi-organ web of tissue-resident memory T cells that functionally adapt to their environment to stop viral spread across the organism. These results have implications for manipulating tissue-resident memory T cells through vaccination and open up new lines of inquiry for the analysis of immune responses at the organism level.

Indexed as

Immunologic MemoryAdministration, CutaneousAnimalsFemaleGene Expression ProfilingInterferon Type IMiceMice, Inbred C57BLOrgan SpecificitySpecific Pathogen-Free OrganismsT-LymphocytesVacciniaVaccinia virusViral VaccinesInterferon Type IViral Vaccinesorganismal immunologysingle-cell analysissystems biologyT cell memoryvaccines

Identifiers

PMID28942919
PMCPMC7895295

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.