Evidence map›Paper›PMID 28940304›Full record

ArticleCancer2018

The FOXA2 transcription factor is frequently somatically mutated in uterine carcinosarcomas and carcinomas.

Matthieu Le Gallo, Meghan L Rudd, Mary Ellen Urick, Nancy F Hansen, National Institutes of Health Intramural Sequencing Center Comparative Sequencing Program, Maria J Merino, David G Mutch, Paul J Goodfellow, James C Mullikin, Daphne W Bell

Open access · greenAbstract read
In one paragraph

Article in Cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

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  16. Integrative analysis of the forkhead box A2 (FOXA2) cistrome for the human endometrium.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Matthieu Le GalloCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Meghan L RuddCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Mary Ellen UrickCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Nancy F HansenCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
National Institutes of Health Intramural Sequencing Center Comparative Sequencing ProgramNational Institutes of Health Intramural Sequencing Center, National Institutes of Health, Rockville, Maryland.
Maria J MerinoLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.
David G MutchDepartment of Obstetrics and Gynecology, Washington University School of Medicine, St. Louis, Missouri.
Paul J GoodfellowDepartment of Obstetrics and Gynecology, The Ohio State University Comprehensive Cancer Center, Columbus, Ohio.ORCID 0000-0002-0260-4583
James C MullikinCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.
Daphne W BellCancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland.ORCID 0000-0001-7314-3932
National Institutes of Health · USThe Ohio State University Comprehensive Cancer Center – Arthur G. James Cancer Hospital and Richard J. Solove Research Institute · USWashington University in St. Louis · US

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Molecular Analyses of Endometrial CancerZIAHG200338 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BELL, DAPHNE · 2009 to 2025
$19.8M
Comparative Genomics Unit ResearchZIAHG200330 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MULLIKIN, JAMES C · 2009 to 2022
$17.9M
Washington University/ Siteman Cancer Center Lead Academic SiteU10CA180833 · NCI · WASHINGTON UNIVERSITY · PI BARTLETT, NANCY L, KOZOWER, BENJAMIN D · 2014 to 2018
$7.6M
Translational Surgical PathologyZIESC000853 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI MERINO, MARIA · 2009 to 2025
$4.3M
Genetic Analyses of Endometrial CancerZ01HG200338 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BELL, DAPHNE · 2007 to 2008
$1.7M
Identification of genetic alterations that underlie endometrial carcinosarcomasZIAHG200379 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BELL, DAPHNE · 2012 to 2020
$1.4M
Intramural NIH HHS Z01 HG200338Intramural NIH HHS ZIA HG200379NCI NIH HHS P30 CA016058NCI NIH HHS U10 CA180833
6 · The paper itself

Abstract

backgroundUterine carcinosarcomas (UCSs) are a rare but clinically aggressive form of cancer. They are biphasic tumors consisting of both epithelial and sarcomatous components. The majority of uterine carcinosarcomas are clonal, with the carcinomatous cells undergoing metaplasia to give rise to the sarcomatous component. The objective of the current study was to identify novel somatically mutated genes in UCSs.

methodsWe whole exome sequenced paired tumor and nontumor DNAs from 14 UCSs and orthogonally validated 464 somatic variants using Sanger sequencing. Fifteen genes that were somatically mutated in at least 2 tumor exomes were Sanger sequenced in another 39 primary UCSs.

resultsOverall, among 53 UCSs in the current study, the most frequently mutated of these 15 genes were tumor protein p53 (TP53) (75.5%), phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha (PIK3CA) (34.0%), protein phosphatase 2, regulatory subunit A, alpha (PPP2R1A) (18.9%), F-box and WD repeat domain containing 7 (FBXW7) (18.9%), chromodomain helicase DNA binding protein 4 (CHD4) (17.0%), and forkhead box A2 (FOXA2) (15.1%). FOXA2 has not previously been implicated in UCSs and was predominated by frameshift and nonsense mutations. One UCS with a FOXA2 frameshift mutation expressed truncated FOXA2 protein by immunoblotting. Sequencing of FOXA2 in 160 primary endometrial carcinomas revealed somatic mutations in 5.7% of serous, 22.7% of clear cell, 9% of endometrioid, and 11.1% of mixed endometrial carcinomas, the majority of which were frameshift mutations.

conclusionsCollectively, the findings of the current study provide compelling genetic evidence that FOXA2 is a pathogenic driver gene in the etiology of primary uterine cancers, including UCSs. Cancer 2018;124:65-73. © 2017 American Cancer Society.

Indexed as

Adenocarcinoma, Clear CellAutoantigensCarcinomaCarcinoma, EndometrioidCarcinosarcomaCell Line, TumorClass I Phosphatidylinositol 3-KinasesEndometrial NeoplasmsF-Box-WD Repeat-Containing Protein 7FemaleHepatocyte Nuclear Factor 3-betaHumansMi-2 Nucleosome Remodeling and Deacetylase ComplexMicrosatellite InstabilityMutationNeoplasms, Cystic, Mucinous, and SerousAutoantigensCHD4 protein, humanClass I Phosphatidylinositol 3-KinasesF-Box-WD Repeat-Containing Protein 7FBXW7 protein, humanFOXA2 protein, humanHepatocyte Nuclear Factor 3-betaMi-2 Nucleosome Remodeling and Deacetylase ComplexPIK3CA protein, humanPPP2R1A protein, humanProtein Phosphatase 2TP53 protein, humanTumor Suppressor Protein p53carcinosarcomaendometrial cancerendometrial carcinomaexomemutationuterine cancer

Identifiers

PMID28940304
PMCPMC5735010
OpenAlexW2760598931

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.