ArticleGigaScience2017
The draft genome sequence of a desert tree Populus pruinosa.
Article in GigaScience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Ancient allopolyploidy and specific subgenomic evolution drove the radiation of poplars and willows.Nature communications · 2025Article
- Genomic Analysis Reveals the Fast-Growing Trait and Improvement Potential for Stress Resistance in the Elite Poplar VarietyInternational journal of molecular sciences · 2025Article
- The chromosome-scale genome and population genomics reveal the adaptative evolution ofHorticulture research · 2024Article
- Haplotype-resolved genome assembly of poplar line NL895 provides a valuable tree genomic resource.Forestry research · 2024Article
- A nearly gapless, highly contiguous reference genome for a doubled haploid line ofForestry research · 2024Article
- Chromosome-level genome assembly of the Asian aspen Populus davidiana Dode.Scientific data · 2023Article
- eYGFPuv-Assisted Transgenic Selection inPlants (Basel, Switzerland) · 2023Article
- Genetic markers and tree properties predicting wood biorefining potential in aspen (Populus tremula) bioenergy feedstock.Biotechnology for biofuels and bioproducts · 2023Article
- Genome-wide characterization leading to simple sequence repeat (SSR) markers development in Shorea robusta.Functional & integrative genomics · 2023Article
- Application and prospects of single-cell and spatial omics technologies in woody plants.Forestry research · 2023Review
- The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv.GigaScience · 2022Article
- Repeated turnovers keep sex chromosomes young in willows.Genome biology · 2022Article
- Advanced Breeding for Biotic Stress Resistance in Poplar.Plants (Basel, Switzerland) · 2022Review
- Conversion between duplicated genes generated by polyploidization contributes to the divergence of poplar and willow.BMC plant biology · 2022Article
- Frequent ploidy changes in Salicaceae indicates widespread sharing of the salicoid whole genome duplication by the relatives of Populus L. and Salix L.BMC plant biology · 2021Article
- Genome-wide comparative analyses of GATA transcription factors among seven Populus genomes.Scientific reports · 2021Article
- Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genome Assembly of Salicaceae Populus deltoides (Eastern Cottonwood) I-69 Based on Nanopore Sequencing and Hi-C Technologies.The Journal of heredity · 2021Article
- Bioinformatic analysis of chromatin organization and biased expression of duplicated genes between two poplars with a common whole-genome duplication.Horticulture research · 2021Article
- A General Model to Explain Repeated Turnovers of Sex Determination in the Salicaceae.Molecular biology and evolution · 2021Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Populus pruinosa is a large tree that grows in deserts and shows distinct differences in both morphology and adaptation compared to its sister species, P. euphratica. Here we present a draft genome sequence for P. pruinosa and examine genomic variations between the 2 species. A total of 60 Gb of clean reads from whole-genome sequencing of a P. pruinosa individual were generated using the Illumina HiSeq2000 platform. The assembled genome is 479.3 Mb in length, with an N50 contig size of 14.0 kb and a scaffold size of 698.5 kb; 45.47% of the genome is composed of repetitive elements. We predicted 35 131 protein-coding genes, of which 88.06% were functionally annotated. Gene family clustering revealed 224 unique and 640 expanded gene families in the P. pruinosa genome. Further evolutionary analysis identified numerous genes with elevated values for pairwise genetic differentiation between P. pruinosa and P. euphratica. We provide the genome sequence and gene annotation for P. pruinosa. A large number of genetic variations were recovered by comparison of the genomes between P. pruinosa and P. euphratica. These variations will provide a valuable resource for studying the genetic bases for the phenotypic and adaptive divergence of the 2 sister species.
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