Evidence map›Paper›PMID 28937650›Full record

ArticleInternational journal of molecular sciences2017

Explaining the Microtubule Energy Balance: Contributions Due to Dipole Moments, Charges, van der Waals and Solvation Energy.

Ahmed Taha Ayoub, Michael Staelens, Alessio Prunotto, Marco A Deriu, Andrea Danani, Mariusz Klobukowski, Jack Adam Tuszynski

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Electro-opening of a microtubule lattice in silico.Computational and structural biotechnology journal · 2021
    Article
  3. Article
  4. Physical energies to the rescue of damaged tissues.World journal of stem cells · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Ahmed Taha AyoubMedicinal Chemistry Department, Heliopolis University, Cairo-Belbeis Desert Rd, El-Nahda, El-Salam, Cairo Governorate 11777, Egypt. atayoub@ualberta.ca.
Michael StaelensDepartment of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada. staelens@ualberta.ca.
Alessio PrunottoIstituto Dalle Molle di Studi sull'Intelligenza Artificiale (IDSIA), Scuola Universitaria Professionale Della Svizzera Italiana (SUPSI), Università Della Svizzera Italiana (USI), Centro Galleria 2, Manno CH-6928, Switzerland. alessio.prunotto@gmail.com.
Marco A DeriuIstituto Dalle Molle di Studi sull'Intelligenza Artificiale (IDSIA), Scuola Universitaria Professionale Della Svizzera Italiana (SUPSI), Università Della Svizzera Italiana (USI), Centro Galleria 2, Manno CH-6928, Switzerland. deriu.marco@gmail.com.ORCID 0000-0003-1918-1772
Andrea DananiIstituto Dalle Molle di Studi sull'Intelligenza Artificiale (IDSIA), Scuola Universitaria Professionale Della Svizzera Italiana (SUPSI), Università Della Svizzera Italiana (USI), Centro Galleria 2, Manno CH-6928, Switzerland. andrea.danani@supsi.ch.
Mariusz KlobukowskiDepartment of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada. mariusz.klobukowski@ualberta.ca.ORCID 0000-0001-9232-9900
Jack Adam TuszynskiDepartment of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada. jackt@ualberta.ca.ORCID 0000-0001-9976-0429
University of Alberta · CAUniversity of Applied Sciences and Arts of Southern Switzerland · CHHeliopolis University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microtubules are the main components of mitotic spindles, and are the pillars of the cellular cytoskeleton. They perform most of their cellular functions by virtue of their unique dynamic instability processes which alternate between polymerization and depolymerization phases. This in turn is driven by a precise balance between attraction and repulsion forces between the constituents of microtubules (MTs)-tubulin dimers. Therefore, it is critically important to know what contributions result in a balance of the interaction energy among tubulin dimers that make up microtubules and what interactions may tip this balance toward or away from a stable polymerized state of tubulin. In this paper, we calculate the dipole-dipole interaction energy between tubulin dimers in a microtubule as part of the various contributions to the energy balance. We also compare the remaining contributions to the interaction energies between tubulin dimers and establish a balance between stabilizing and destabilizing components, including the van der Waals, electrostatic, and solvent-accessible surface area energies. The energy balance shows that the GTP-capped tip of the seam at the plus end of microtubules is stabilized only by - 9 kcal/mol, which can be completely reversed by the hydrolysis of a single GTP molecule, which releases + 14 kcal/mol and destabilizes the seam by an excess of + 5 kcal/mol. This triggers the breakdown of microtubules and initiates a disassembly phase which is aptly called a catastrophe.

Indexed as

Energy MetabolismGuanosine TriphosphateMicrotubulesProtein ConformationTubulinGuanosine TriphosphateTubulindipole momentdynamic instabilitymicrotubules

Identifiers

PMID28937650
PMCPMC5666724
OpenAlexW2760708460

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.