Evidence map›Paper›PMID 28935987›Full record

ArticleScientific reports2017

Toward the identification of a type I toxin-antitoxin system in the plasmid DNA of dairy Lactobacillus rhamnosus.

Claudia Folli, Alessia Levante, Riccardo Percudani, Davide Amidani, Stefania Bottazzi, Alberto Ferrari, Claudio Rivetti, Erasmo Neviani, Camilla Lazzi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Genome Sequencing of fiveMicroorganisms · 2021
    Article
  10. Article
  11. RNA Regulated Toxin-Antitoxin Systems in Pathogenic Bacteria.Frontiers in cellular and infection microbiology · 2021
    Review
  12. Review
  13. Article
  14. Expression of DinJ-YafQ System ofMicroorganisms · 2019
    Article
  15. Review
  16. Article
  17. Review
  18. How the Fewest Become the Greatest.Frontiers in microbiology · 2018
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Claudia FolliDepartment of Food and Drug, University of Parma, 43124, Parma, Italy. claudia.folli@unipr.it.
Alessia LevanteDepartment of Food and Drug, University of Parma, 43124, Parma, Italy.
Riccardo PercudaniDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124, Parma, Italy.ORCID 0000-0001-8452-1062
Davide AmidaniDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124, Parma, Italy.
Stefania BottazziDepartment of Food and Drug, University of Parma, 43124, Parma, Italy.
Alberto FerrariDepartment of Food and Drug, University of Parma, 43124, Parma, Italy.
Claudio RivettiDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, 43124, Parma, Italy.
Erasmo NevianiDepartment of Food and Drug, University of Parma, 43124, Parma, Italy.
Camilla LazziDepartment of Food and Drug, University of Parma, 43124, Parma, Italy. camilla.lazzi@unipr.it.
University of Parma · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasmids carry genes that give bacteria beneficial traits and allow them to survive in competitive environments. In many cases, they also harbor toxin-antitoxin (TA) systems necessary for plasmid maintenance. TA systems are generally characterized by a stable "toxin", a protein or peptide capable of killing the cell upon plasmid loss and by an unstable "antitoxin", a protein or a non-coding RNA that inhibits toxin activity. Here we report data toward the identification of a RNA-regulated TA system in the plasmid DNA of L. rhamnosus isolated from cheese. The proposed TA system comprises two convergently transcribed RNAs: a toxin RNA encoding a 29 amino acid peptide named Lpt and an antitoxin non-coding RNA. Both toxin and antitoxin RNAs resulted upregulated under conditions mimicking cheese ripening. The toxicity of the Lpt peptide was demonstrated in E. coli by cloning the Lpt ORF under the control of an inducible promoter. Bioinformatics screening of the bacterial nucleotide database, shows that regions homologous to the Lpt TA locus are widely distributed in the Lactobacillus genus, particularly within the L. casei group, suggesting a relevant role of TA systems in plasmid maintenance of cheese microbiota.

Indexed as

Amino Acid SequenceBacterial ProteinsBacterial ToxinsBase SequenceCheeseDNA, BacterialGene Expression Regulation, BacterialLacticaseibacillus rhamnosusPeptidesPlasmidsRNA, BacterialSequence Homology, Amino AcidSequence Homology, Nucleic AcidToxin-Antitoxin SystemsBacterial ProteinsBacterial ToxinsDNA, BacterialPeptidesRNA, Bacterial

Identifiers

PMID28935987
PMCPMC5608710
OpenAlexW2755401582

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.