Evidence map›Paper›PMID 28935979›Full record

ArticleScientific reports2017

Intergrative metabolomic and transcriptomic analyses unveil nutrient remobilization events in leaf senescence of tobacco.

Wei Li, Hailiang Zhang, Xiaoxu Li, Fengxia Zhang, Cheng Liu, Yongmei Du, Xiaoming Gao, Zenglin Zhang, Xiaobing Zhang, Zhihui Hou and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 90 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Wei LiTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Hailiang ZhangTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Xiaoxu LiTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Fengxia ZhangInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Datun Road, Chaoyang District, Beijing, 100101, China.
Cheng LiuTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Yongmei DuTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Xiaoming GaoTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Zenglin ZhangTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Xiaobing ZhangTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Zhihui HouTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Hui ZhouTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Xiaofei ShengTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China.
Guodong WangInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Datun Road, Chaoyang District, Beijing, 100101, China.ORCID 0000-0001-9917-0656
Yongfeng GuoTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, Shandong, 266101, China. guoyongfeng@caas.cn.ORCID 0000-0002-2033-7386
Tobacco Research Institute · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leaf senescence in plants is a coordinated process that involves remobilization of nutrients from senescing leaves to sink tissues. The molecular events associated with nutrient remobilization are however not well understood. In this study the tobacco system with a source-sink relationship between different leaf positions was used in analyzing the spatiotemporal changes of 76 metabolites from leaves at 3 different stalk positions and 8 developmental stages. The metabolomic data was then compared with RNA-seq data from the same samples to analyze the activities of the metabolic pathways that are important for nutrient remobilization. Integrative analyses on metabolites accumulation and expression changes of enzyme-encoding genes in corresponding metabolic pathways indicated a significant up-regulation of the tricarboxylic acid cycle and related metabolism of sugars, amino acids and fatty acids, suggesting the importance of energy metabolism during leaf senescence. Other changes of the metabolism during tobacco leaf senescence include increased activities of the GS/GOGAT cycle which is responsible for nitrogen recycling, and increased accumulation of nicotine. The results also suggested that a number of compounds seemed to be transported from senescing leaves at lower positions to sink leaves at upper positions. Some of these metabolites could play a role in nutrient remobilization.

Indexed as

Gene Expression Regulation, PlantMetabolic Networks and PathwaysTranscriptomeEnergy MetabolismGene Expression ProfilingMetabolomeMetabolomicsMutationNicotianaNutrientsPlant LeavesNutrients

Identifiers

PMID28935979
PMCPMC5608745
OpenAlexW2755997632

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.