Evidence map›Paper›PMID 28935952›Full record

ArticleNature communications2017

Application of bio-orthogonal proteome labeling to cell transplantation and heterochronic parabiosis.

Yan Liu, Michael J Conboy, Melod Mehdipour, Yutong Liu, Thanhtra P Tran, Aaron Blotnick, Prasanna Rajan, Thalie Cavalcante Santos, Irina M Conboy

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yan LiuDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.
Michael J ConboyDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.
Melod MehdipourDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.
Yutong LiuDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.ORCID http://orcid.org/0000-0001-5683-5451
Thanhtra P TranDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.
Aaron BlotnickDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.
Prasanna RajanDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.
Thalie Cavalcante SantosDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA.
Irina M ConboyDepartment of Bioengineering, UC Berkeley and QB3 Institutes, Berkeley, CA, 94709, USA. iconboy@berkeley.edu.
University of California, Berkeley · USSun Yat-sen University · CNBerkeley College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Studies of heterochronic parabiosis demonstrated that with age, the composition of the circulatory milieu changes in ways that broadly inhibit tissue regenerative capacity. In addition, local tissue niches have age-specific influences on their resident stem cells. Here we use bio-orthogonal proteome labeling for detecting in vivo proteins present only in transplanted myoblasts, but not in host tissue, and proteins exclusive to one young mouse and transferred during parabiosis to its old partner. We use a transgenic mouse strain that ubiquitously expresses a modified tRNA methionine synthase, metRS, which preferentially incorporates the methionine surrogate azido-nor-leucine (ANL) into newly generated proteins. Using click chemistry and a modified antibody array to detect ANL-labeled proteins, we identify several 'young' systemic factors in old regenerating muscle of the heterochronic parabiotic partners. Our approach enables the selective profiling of mammalian proteomes in mixed biological environments such as cell and tissue transplantation, apheresis or parabiosis.Clarifying the source of proteins in mixed biological environments, such as after transplantation or parabiosis, remains a challenge. Here, the authors address this need with a mouse strain that incorporates a methionine derivate into proteins, allowing for their detection using click chemistry and antibody arrays.

Indexed as

Cell Transplantation5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseAgingAnimalsAzidesGene Expression RegulationMiceMice, Inbred C57BLMice, TransgenicMuscle, SkeletalMyoblastsNorleucineProteomeRNA, Transfer5-Methyltetrahydrofolate-Homocysteine S-MethyltransferaseAzidesazidonorleucineNorleucineProteomeRNA, Transfer

Identifiers

PMID28935952
PMCPMC5608760
OpenAlexW2754672693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.