Evidence map›Paper›PMID 28935873›Full record

ArticleScientific reports2017

Whole genome sequencing, molecular typing and in vivo virulence of OXA-48-producing Escherichia coli isolates including ST131 H30-Rx, H22 and H41 subclones.

María de Toro, Javier Fernández, Vanesa García, Azucena Mora, Jorge Blanco, Fernando de la Cruz, M Rosario Rodicio

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Antimicrobial resistance in food-associatedBioscience of microbiota, food and health · 2024
    Review
  2. Production of OXA-48 carbapenemase acts as an independent risk factor for poor outcome in Klebsiella pneumoniae infection.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genomic Characterization ofAntibiotics (Basel, Switzerland) · 2020
    Article
  8. Article
  9. Whole Genome Sequencing and Characteristics ofFrontiers in microbiology · 2020
    Article
  10. High Prevalence of ST131 Subclades C2-Frontiers in cellular and infection microbiology · 2020
    Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

María de ToroPlataforma de Genómica y Bioinformática, Centro de Investigación Biomédica de La Rioja (CIBIR), Logroño, Spain.
Javier FernándezDepartamento de Biología Funcional, Área de Microbiología, Universidad de Oviedo (UO), Oviedo, Spain.
Vanesa GarcíaDepartamento de Biología Funcional, Área de Microbiología, Universidad de Oviedo (UO), Oviedo, Spain.
Azucena MoraLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.
Jorge BlancoLaboratorio de Referencia de Escherichia coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.ORCID 0000-0003-0264-4136
Fernando de la CruzDepartamento de Biología Molecular and Instituto de Biomedicina y Biotecnología de Cantabria (IBBTEC), Universidad de Cantabria-CSIC, Santander, Spain.
M Rosario RodicioDepartamento de Biología Funcional, Área de Microbiología, Universidad de Oviedo (UO), Oviedo, Spain. rrodicio@uniovi.es.
Universidad de Oviedo · ESUniversidade de Santiago de Compostela · ESCenter for Biomedical Research of La Rioja · ESUniversidad de Cantabria · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbapenem-resistant Enterobacteriaceae, including the increasingly reported OXA-48 Escherichia coli producers, are an emerging public health threat worldwide. Due to their alarming detection in our healthcare setting and their possible presence in the community, seven OXA-48-producing, extraintestinal pathogenic E. coli were analysed by whole genome sequencing as well as conventional tools, and tested for in vivo virulence. As a result, five E. coli OXA-48-producing subclones were detected (O25:H4-ST131/PST43-fimH30-virotype E; O25:H4-ST131/PST9-fimH22-virotype D5, O16:H5-ST131/PST506-fimH41; O25:H5-ST83/PST207 and O9:H25-ST58/PST24). Four ST131 and one ST83 isolates satisfied the ExPEC status, and all except the O16:H5 ST131 isolate were UPEC. All isolates exhibited local inflammatory response with extensive subcutaneous necrosis but low lethality when tested in a mouse sepsis model. The bla

Indexed as

AgedAged, 80 and overAnimalsbeta-LactamasesDrug Resistance, BacterialEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsExtraintestinal Pathogenic Escherichia coliFemaleGenome, BacterialHumansMaleMiceMiddle AgedMolecular Typingbeta-lactamase OXA-48, E colibeta-LactamasesEscherichia coli Proteins

Identifiers

PMID28935873
PMCPMC5608912
OpenAlexW2756016179

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.