ArticleBMC genomics2017
Evolution and expression analysis reveal the potential role of the HD-Zip gene family in regulation of embryo abortion in grapes (Vitis vinifera L.).
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed, 94 citations in OpenAlex.
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- Genome-wide characterisation of HD-Zip transcription factors and functional analysis of PbHB24 during stone cell formation in Chinese white pear (Pyrus bretschneideri).BMC plant biology · 2024Article
- Genome- and transcriptome-wide identification of trehalose-6-phosphate phosphatases (TPP) gene family and their expression patterns under abiotic stress and exogenous trehalose in soybean.BMC plant biology · 2023Article
- Genome-Wide Identification and Expression Analysis of the bHLH Transcription Factor Family in Wintersweet (International journal of molecular sciences · 2023Article
- Genome-wide identification, bioinformatics and expression analysis of HD-Zip gene family in peach.BMC plant biology · 2023Article
- Transcriptome sequencing and gene expression analysis revealed early ovule abortion of Paeonia ludlowii.BMC genomics · 2023Article
- Cytological and Molecular Mechanism of Low Pollen Grain Viability in a Germplasm Line of Double Lotus.Plants (Basel, Switzerland) · 2023Article
- Genome-wide identification and systematic analysis of the HD-Zip gene family and its roles in response to pH in Panax ginseng Meyer.BMC plant biology · 2023Article
- Genome-wide identification and characterization of the HD-Zip gene family and expression analysis in response to stress inPlant signaling & behavior · 2022Article
- Genome-Wide Characterization and Expression Profiling of HD-Zip Genes in ABA-Mediated Processes inPlants (Basel, Switzerland) · 2022Article
- The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response ofBioengineering (Basel, Switzerland) · 2022Article
- Genome-wide analysis of trehalose-6-phosphate phosphatases (TPP) gene family in wheat indicates their roles in plant development and stress response.BMC plant biology · 2022Article
- Genome-Wide Identification, Classification, and Expression Analysis of the HD-Zip Transcription Factor Family in Apple (International journal of molecular sciences · 2022Article
- Identification of miRNAs-mediated seed and stone-hardening regulatory networks and their signal pathway of GA-induced seedless berries in grapevine (V. vinifera L.).BMC plant biology · 2021Article
- VvHDZ28 positively regulate salicylic acid biosynthesis during seed abortion in Thompson Seedless.Plant biotechnology journal · 2021Article
- Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time.BMC plant biology · 2021Article
- Genome-wide identification and expression analyses of nitrate transporter family genes in wild soybean (Glycine soja).Journal of applied genetics · 2020Article
- Genome-wide characterization and expression profiling of Eucalyptus grandis HD-Zip gene family in response to salt and temperature stress.BMC plant biology · 2020Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe HD-Zip family has a diversity of functions during plant development. In this study, we identify 33 HD-Zip transcription factors in grape and detect their expressions in ovules and somatic embryos, as well as in various vegetative organs.
resultsA genome-wide survey for HD-Zip transcription factors in Vitis was conducted based on the 12 X grape genome (V. vinifera L.). A total of 33 members were identified and classified into four subfamilies (I-IV) based on phylogeny analysis with Arabidopsis, rice and maize. VvHDZs in the same subfamily have similar protein motifs and intron/exon structures. An evaluation of duplication events suggests several HD-Zip genes arose before the divergence of the grape and Arabidopsis lineages. The 33 members of HD-Zip were differentially expressed in ovules of the stenospermic grape, Thompson Seedless and of the seeded grape, Pinot noir. Most have higher expressions during ovule abortion in Thompson Seedless. In addition, transcripts of the HD-Zip family were also detected in somatic embryogenesis of Thompson Seedless and in different vegetative organs of Thompson Seedless at varying levels. Additionally, VvHDZ28 is located in the nucleus and had transcriptional activity consistent with the typical features of the HD-Zip family. Our results provide a foundation for future grape HD-Zip gene function research.
conclusionsThe identification and expression profiles of the HD-Zip transcription factors in grape, reveal their diverse roles during ovule abortion and organ development. Our results lay a foundation for functional analysis of grape HDZ genes.
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