Evidence map›Paper›PMID 28934590›Full record

ReviewAnnual review of genetics2017

The Relationship Between the Human Genome and Microbiome Comes into View.

Julia K Goodrich, Emily R Davenport, Andrew G Clark, Ruth E Ley

Registry-linked trialOpen access · greenAbstract readReview
In one paragraph

Review in Annual review of genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06992453 (Disentangling Microbiome Engraftment by Multi-omics of the Gut Ecosystem During Fecal Transplant), which is not on this map. Cited by 159 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
159citing papers in PubMed, 1 pooled it
29.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06992453 nanot yet recruitingnot on this mapstarted 2026, after this paper: background citation

Disentangling Microbiome Engraftment by Multi-omics of the Gut Ecosystem During Fecal Transplant

TypeinterventionalSponsorCatholic University of the Sacred HeartRan2026 to 2029Enrolled90ConditionsRecurrent C. Difficile (rCDI), Ulcerative Colitis (UC), Metabolic Syndrome (MetS)ArmsFecal microbiota transplantation (FMT)
3 · Its place in the literature

Who cites it

159 citing papers in PubMed, 1 synthesis or guideline pooled it, 323 citations in OpenAlex.

  1. Nationality and body location alter human skin microbiome.Applied microbiology and biotechnology · 2021
    Pooled it
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  19. Druggable proteins ofFrontiers in pharmacology · 2025
    Article
  20. HostFrontiers in microbiology · 2025
    Article

99 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Julia K GoodrichDepartment of Microbiome Science, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany; email: ruth.ley@tuebingen.mpg.de.
Emily R DavenportDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.
Andrew G ClarkDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.
Ruth E LeyDepartment of Microbiome Science, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany; email: ruth.ley@tuebingen.mpg.de.
Cornell University · USMax Planck Institute for Developmental Biology · DE

Funding

Genetic Transmission of Components of the Human Gut MicrobiomeR01DK093595 · NIDDK · CORNELL UNIVERSITY · PI CLARK, ANDREW G, LEY, RUTH EMILY · 2011 to 2020
$3.5M
Modeling Human Gut Microbiome Community Structure in Healthy and Diseased StatesF32DK109595 · NIDDK · CORNELL UNIVERSITY · PI DAVENPORT, EMILY · 2016 to 2018
$173k
NIDDK NIH HHS F32 DK109595NIDDK NIH HHS R01 DK093595
6 · The paper itself

Abstract

The body's microbiome, composed of microbial cells that number in the trillions, is involved in human health and disease in ways that are just starting to emerge. The microbiome is assembled at birth, develops with its host, and is greatly influenced by environmental factors such as diet and other exposures. Recently, a role for human genetic variation has emerged as also influential in accounting for interpersonal differences in microbiomes. Thus, human genes may influence health directly or by promoting a beneficial microbiome. Studies of the heritability of gut microbiotas reveal a subset of microbes whose abundances are partly genetically determined by the host. However, the use of genome-wide association studies (GWASs) to identify human genetic variants associated with microbiome phenotypes has proven challenging. Studies to date are small by GWAS standards, and cross-study comparisons are hampered by differences in analytical approaches. Nevertheless, associations between microbes or microbial genes and human genes have emerged that are consistent between human populations. Most notably, higher levels of beneficial gut bacteria called Bifidobacteria are associated with the human lactase nonpersister genotype, which typically confers lactose intolerance, in several different human populations. It is time for the microbiome to be incorporated into studies that quantify interactions among genotype, environment, and the microbiome in order to predict human disease susceptibility.

Indexed as

Genome, HumanAmyotrophic Lateral SclerosisBifidobacteriumDietGastrointestinal MicrobiomeGastrointestinal TractGenetic VariationGenome-Wide Association StudyGenotypeHuman GeneticsHumansLactose IntoleranceObesityPhenotypeQuantitative Trait, HeritableSchizophreniagenome-wide association studiesheritabilityhuman studiesmicrobiomemicrobiota composition

Identifiers

PMID28934590
PMCPMC5744868
OpenAlexW2611069262

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.