Evidence map›Paper›PMID 28934492›Full record

ArticleNucleic acids research2017

Concerted action of two 3' cap-independent translation enhancers increases the competitive strength of translated viral genomes.

Zhiyou Du, Olga M Alekhina, Konstantin S Vassilenko, Anne E Simon

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Structure of saguaro cactus virus 3' translational enhancer mimics 5' cap for eIF4E binding.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Journal of virology · 2021
    Article
  14. Article
  15. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
  16. Article
  17. Article
  18. mBio · 2019
    Article
  19. Noncanonical Translation Initiation in Eukaryotes.Cold Spring Harbor perspectives in biology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Zhiyou DuDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
Olga M AlekhinaInstitute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
Konstantin S VassilenkoInstitute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
Anne E SimonDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
Institute of Protein Research · RUUniversity of Maryland, College Park · US

Funding

New Paradigms for Ribosome Recoding in (+)Strand VirusesR21AI117882 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI SIMON, ANNE ELIZABETH · 2015 to 2016
$410k
NIAID NIH HHS R21 AI117882
6 · The paper itself

Abstract

Several families of plant viruses evolved cap-independent translation enhancers (3'CITE) in the 3' untranslated regions of their genomic (g)RNAs to compete with ongoing cap-dependent translation of cellular mRNAs. Umbravirus Pea enation mosaic virus (PEMV)2 is the only example where three 3'CITEs enhance translation: the eIF4E-binding Panicum mosaic virus-like translational enhancer (PTE) and ribosome-binding 3' T-shaped structure (TSS) have been found in viruses of different genera, while the ribosome-binding kl-TSS that provides a long-distance interaction with the 5' end is unique. We report that the PTE is the key translation promoting element, but inhibits translation in cis and in trans in the absence of the kl-TSS by sequestering initiation factor eIF4G. PEMV2 strongly outcompeted a cellular mRNA mimic for translation, indicating that the combination of kl-TSS and PTE is highly efficient. Transferring the 3'-5' interaction from the kl-TSS to the PTE (to fulfill its functionality as found in other viruses) supported translationin vitro, but gRNA did not accumulate to detectable levels in protoplasts in the absence of the kl-TSS. It was shown that the PTE in conjunction with the kl-TSS did not markedly affect the translation initiation rate but rather increased the number of gRNAs available for translation. A model is proposed to explain how 3'CITE-based regulation of ribosome recruitment enhances virus fitness.

Indexed as

Enhancer Elements, GeneticGenome, ViralArabidopsisCodon, InitiatorEukaryotic Initiation Factor-4GLuteoviridaePolyribosomesProtein BiosynthesisRNA CapsCodon, InitiatorEukaryotic Initiation Factor-4GRNA Caps

Identifiers

PMID28934492
PMCPMC5766195
OpenAlexW2738397525

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.