Evidence map›Paper›PMID 28931901›Full record

ArticleScientific reports2017

Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies.

Z Hou, W C Nelson, J C Stegen, C J Murray, E Arntzen, A R Crump, D W Kennedy, M C Perkins, T D Scheibe, J K Fredrickson and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Z HouEnergy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, USA. zhangshuan.hou@pnnl.gov.ORCID 0000-0002-9388-6060
W C NelsonEnvironmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID 0000-0002-1873-3929
J C StegenEnvironmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
C J MurrayEnergy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
E ArntzenEnergy and Environment Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
A R CrumpEnvironmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID 0000-0002-2443-6146
D W KennedyEnvironmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID 0000-0003-0763-501X
M C PerkinsGraphic Design, Pacific Northwest National Laboratory, Richland, WA, USA.
T D ScheibeEnvironmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.ORCID 0000-0002-8864-5772
J K FredricksonEnvironmental and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.
J M ZacharaPhysical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hyporheic zone (HZ) is the active ecotone between the surface stream and groundwater, where exchanges of nutrients and organic carbon have been shown to stimulate microbial activity and transformations of carbon and nitrogen. To examine the relationship between sediment texture, biogeochemistry, and biological activity in the Columbia River HZ, the grain size distributions for sediment samples were characterized to define geological facies, and the relationships among physical properties of the facies, physicochemical attributes of the local environment, and the structure and activity of associated microbial communities were examined. Mud and sand content and the presence of microbial heterotrophic and nitrifying communities partially explained the variability in many biogeochemical attributes such as C:N ratio and %TOC. Microbial community analysis revealed a high relative abundance of putative ammonia-oxidizing Thaumarchaeota and nitrite-oxidizing Nitrospirae. Network analysis showed negative relationships between sets of co-varying organisms and sand and mud contents, and positive relationships with total organic carbon. Our results indicate grain size distribution is a good predictor of biogeochemical properties, and that subsets of the overall microbial community respond to different sediment texture. Relationships between facies and hydrobiogeochemical properties enable facies-based conditional simulation/mapping of these properties to inform multiscale modeling of hyporheic exchange and biogeochemical processes.

Identifiers

PMID28931901
PMCPMC5607297

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.