Evidence map›Paper›PMID 28930658›Full record

ArticleImmunity2017

Defined Sensing Mechanisms and Signaling Pathways Contribute to the Global Inflammatory Gene Expression Output Elicited by Ionizing Radiation.

Prabhat K Purbey, Philip O Scumpia, Peter J Kim, Ann-Jay Tong, Keisuke S Iwamoto, William H McBride, Stephen T Smale

Abstract read
In one paragraph

Article in Immunity, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Article
  2. Article
  3. p21Nature aging · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. When DNA-damage responses meet innate and adaptive immunity.Cellular and molecular life sciences : CMLS · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Prabhat K PurbeyDepartment of Microbiology, Immunology, and Molecular Genetics, and Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Philip O ScumpiaDepartment of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Peter J KimDepartment of Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Ann-Jay TongDepartment of Microbiology, Immunology, and Molecular Genetics, and Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Keisuke S IwamotoDepartment of Radiation Oncology, University of California, Los Angeles, Los Angeles, CA 90095, USA.
William H McBrideDepartment of Radiation Oncology, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Stephen T SmaleDepartment of Microbiology, Immunology, and Molecular Genetics, and Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA. Electronic address: smale@mednet.ucla.edu.

Funding

UCLA Center for Biological RadioprotectorsU19AI067769 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MCBRIDE, WILLIAM H. · 2005 to 2019
$44.6M
Vitamin D Metabolism in LeprosyP50AR063020 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PELLEGRINI, MATTEO · 2012 to 2016
$7.8M
Selective Regulation of Pro-Inflammatory Genes in MacrophagesR01GM086372 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SMALE, STEPHEN T · 2008 to 2015
$2.5M
Regulation of macrophage transcriptional networks by stress pathways in the skinK08AR066545 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SCUMPIA, PHILIP · 2014 to 2018
$781k
Regulation of Langerhans Cell Migration by Invariant Gamma Delta T CellsK08AR062593 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KIM, PETER JUNGHAN · 2012 to 2016
$651k
NIAID NIH HHS U19 AI067769NIAMS NIH HHS K08 AR062593NIAMS NIH HHS K08 AR066545NIAMS NIH HHS P50 AR063020NIGMS NIH HHS R01 GM086372
6 · The paper itself

Abstract

Environmental insults are often detected by multiple sensors that activate diverse signaling pathways and transcriptional regulators, leading to a tailored transcriptional output. To understand how a tailored response is coordinated, we examined the inflammatory response elicited in mouse macrophages by ionizing radiation (IR). RNA-sequencing studies revealed that most radiation-induced genes were strongly dependent on only one of a small number of sensors and signaling pathways, notably the DNA damage-induced kinase ATM, which regulated many IR-response genes, including interferon response genes, via an atypical IRF1-dependent, STING-independent mechanism. Moreover, small, defined sets of genes activated by p53 and NRF2 accounted for the selective response to radiation in comparison to a microbial inducer of inflammation. Our findings reveal that genes comprising an environmental response are activated by defined sensing mechanisms with a high degree of selectivity, and they identify distinct components of the radiation response that might be susceptible to therapeutic perturbation.

Indexed as

Radiation, IonizingSignal TransductionAdaptor Proteins, Vesicular TransportAnimalsAtaxia Telangiectasia Mutated ProteinsCluster AnalysisDNA-Activated Protein KinaseDose-Response Relationship, RadiationExtracellular Signal-Regulated MAP KinasesGene Expression ProfilingGene Expression RegulationGene Knockout TechniquesHumansInflammationInterferonsMacrophagesAdaptor Proteins, Vesicular TransportAtaxia Telangiectasia Mutated ProteinsDNA-Activated Protein KinaseExtracellular Signal-Regulated MAP KinasesInterferonsMembrane ProteinsMyeloid Differentiation Factor 88NF-E2-Related Factor 2p38 Mitogen-Activated Protein KinasesReactive Oxygen SpeciesReceptor, Interferon alpha-betaSTING1 protein, humanSTING ProteinTICAM1 protein, humanTranscriptional Regulator ERGTumor Suppressor Protein p53ATMInflammationInnate ImmunityInterferon ResponseIonizing RadiationMacrophagesp53Reactive Oxygen SpeciesSignal TransductionTranscriptional Regulation

Identifiers

PMID28930658
PMCPMC5661954

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.