ArticleEmerging infectious diseases2017
Investigation of Outbreaks of Salmonella enterica Serovar Typhimurium and Its Monophasic Variants Using Whole-Genome Sequencing, Denmark.
Article in Emerging infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed.
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- Salmonella isolated from street foods and environment of an urban park: A whole genome sequencing approach.PloS one · 2025Article
- Genomic dissection of the antimicrobial resistance epidemiology ofFrontiers in microbiology · 2025Article
- Outbreak detection in Harar town and Kersa district, Ethiopia using phylogenetic analysis and source attribution.BMC infectious diseases · 2024Article
- DODGE: automated point source bacterial outbreak detection using cumulative long term genomic surveillance.Bioinformatics (Oxford, England) · 2024Article
- Characterization of MLST-99Microbiology (Reading, England) · 2024Article
- Re-Emergence of HMPV in Gwangju, South Korea, after the COVID-19 Pandemic.Pathogens (Basel, Switzerland) · 2023Article
- Prevalence and whole genome phylogenetic analysis reveal genetic relatedness between antibiotic resistance Salmonella in hatchlings and older chickens from farms in Nigeria.Poultry science · 2023Article
- Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018.Emerging infectious diseases · 2023Article
- Comparing Multiple Locus Variable-Number Tandem Repeat Analyses with Whole-Genome Sequencing as Typing Method for Salmonella Enteritidis Surveillance in The Netherlands, January 2019 to March 2020.Microbiology spectrum · 2022Article
- K-mer based prediction ofMicrobial genomics · 2022Article
- Rapid Multilateral and Integrated Public Health Response to a Cross-City Outbreak ofFrontiers in microbiology · 2022Article
- Whole genome sequencing and protein structure analyses of target genes for the detection of Salmonella.Scientific reports · 2021Article
- Enhancing genomics-based outbreak detection of endemicMicrobial genomics · 2021Article
- Genomic Characterization ofPathogens (Basel, Switzerland) · 2021Article
- Subtyping Salmonella isolated from pet dogs with multilocus sequence typing (MLST) and clustered regularly interspaced short palindromic repeats (CRISPRs).AMB Express · 2021Article
- Article
- Complete microbial genomes for public health in Australia and the Southwest Pacific.Microbial genomics · 2020Article
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6 authors.
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Abstract
Whole-genome sequencing is rapidly replacing current molecular typing methods for surveillance purposes. Our study evaluates core-genome single-nucleotide polymorphism analysis for outbreak detection and linking of sources of Salmonella enterica serovar Typhimurium and its monophasic variants during a 7-month surveillance period in Denmark. We reanalyzed and defined 8 previously characterized outbreaks from the phylogenetic relatedness of the isolates, epidemiologic data, and food traceback investigations. All outbreaks were identified, and we were able to exclude unrelated and include additional related human cases. We were furthermore able to link possible food and veterinary sources to the outbreaks. Isolates clustered according to sequence types (STs) 19, 34, and 36. Our study shows that core-genome single-nucleotide polymorphism analysis is suitable for surveillance and outbreak investigation for Salmonella Typhimurium (ST19 and ST36), but whole genome-wide analysis may be required for the tight genetic clone of monophasic variants (ST34).
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