Evidence map›Paper›PMID 28929824›Full record

ArticleExpert review of molecular diagnostics2017

Size and methylation mosaicism in males with Fragile X syndrome.

Poonnada Jiraanont, Madhur Kumar, Hiu-Tung Tang, Glenda Espinal, Paul J Hagerman, Randi J Hagerman, Nuanchan Chutabhakdikul, Flora Tassone

Open access · greenAbstract read
In one paragraph

Article in Expert review of molecular diagnostics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 61 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Poonnada Jiraanonta Department of Biochemistry and Molecular Medicine , University of California, School of Medicine , Davis , CA , USA.ORCID 0000-0003-4938-1468
Madhur Kumara Department of Biochemistry and Molecular Medicine , University of California, School of Medicine , Davis , CA , USA.
Hiu-Tung Tanga Department of Biochemistry and Molecular Medicine , University of California, School of Medicine , Davis , CA , USA.
Glenda Espinala Department of Biochemistry and Molecular Medicine , University of California, School of Medicine , Davis , CA , USA.
Paul J Hagermana Department of Biochemistry and Molecular Medicine , University of California, School of Medicine , Davis , CA , USA.
Randi J Hagermanc M.I.N.D. Institute , University of California Davis Medical Center , Sacramento , CA , USA.
Nuanchan Chutabhakdikulb Research Center for Neuroscience, Institute of Molecular Biosciences , Mahidol University , Nakornpathom , Thailand.
Flora Tassonea Department of Biochemistry and Molecular Medicine , University of California, School of Medicine , Davis , CA , USA.
University of California, Davis · USUniversity of California Davis Medical Center · USMahidol University · TH

Funding

GENOTYPE/PHENOTYPE RELATIONSHIPS IN FRAGILE X FAMILIESR01HD036071 · NICHD · UNIVERSITY OF CALIFORNIA DAVIS · PI PAUL J HAGERMAN, RANDI J. HAGERMAN · 1998 to 2026
$13.8M
Expression of the Fragile X GeneR01HD040661 · NICHD · UNIVERSITY OF CALIFORNIA DAVIS · PI HAGERMAN, PAUL J · 2002 to 2016
$4.3M
Epigenetic regulation of the FMR1 geneR01GM113929 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHEDIN, FREDERIC LOUIS, HAGERMAN, PAUL J · 2015 to 2018
$1.9M
NICHD NIH HHS R01 HD036071NICHD NIH HHS R01 HD040661NIGMS NIH HHS R01 GM113929
6 · The paper itself

Abstract

backgroundSize and methylation mosaicism are a common phenomenon in Fragile X syndrome (FXS). Here, the authors report a study on twelve fragile X males with atypical mosaicism, seven of whom presented with autism spectrum disorder.

methodsA combination of Southern Blot and PCR analysis was used for CGG allele sizing and methylation. FMR1 mRNA and FMRP expression were measured by qRT-PCR and by Homogeneous Time Resolved Fluorescence methodology, respectively.

resultsDNA analysis showed atypical size- or methylation-mosaicism with both, full mutation and smaller (normal to premutation) alleles, as well as a combination of methylated and unmethylated alleles. Four individuals carried a deletion of the CGG repeat and portions of the flanking regions. The extent of methylation among the participants was reflected in the lower FMR1 mRNA and FMRP expression levels detected in these subjects.

conclusionDecreased gene expression is likely the main contributor to the cognitive impairment observed in these subjects; although the presence of a normal allele did not appear to compensate for the presence of the full mutation, it correlated with better cognitive function in some but not all of the reported cases emphasizing the complexity of the molecular and clinical profile in FXS.

Indexed as

DNA MethylationMosaicismTrinucleotide Repeat ExpansionAdolescentAdultAllelesChildChild, PreschoolFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeGene Expression RegulationHumansInfantMaleMutationRNA, MessengerFragile X Messenger Ribonucleoprotein 1RNA, MessengerdeletionFMR1mRNAFMRPfragile X syndromemethylationmosaicismtranscription

Identifiers

PMID28929824
PMCPMC5924764
OpenAlexW2755528949

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.