Evidence map›Paper›PMID 28929610›Full record

ArticlePlant biotechnology journal2018

Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil.

Xiao-Hong Yu, Rebecca E Cahoon, Patrick J Horn, Hai Shi, Richa R Prakash, Yuanheng Cai, Maegan Hearney, Kent D Chapman, Edgar B Cahoon, Jorg Schwender and 1 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Imaging plant metabolism in situ.Journal of experimental botany · 2024
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Transcriptome Analysis and Identification of Lipid Genes inInternational journal of molecular sciences · 2021
    Article
  15. Article
  16. Article
  17. Expression of a LycheePlant physiology · 2019
    Article
  18. Article
  19. Article
  20. Seeds as oil factories.Plant reproduction · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Xiao-Hong YuDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Rebecca E CahoonCenter for Plant Science Innovation, Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.
Patrick J HornDepartment of Biological Sciences, BioDiscovery Institute, University of North Texas, Denton, TX, USA.
Hai ShiBiology Department, Brookhaven National Laboratory, Upton, NY, USA.
Richa R PrakashDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Yuanheng CaiDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Maegan HearneyBiology Department, Brookhaven National Laboratory, Upton, NY, USA.
Kent D ChapmanDepartment of Biological Sciences, BioDiscovery Institute, University of North Texas, Denton, TX, USA.
Edgar B CahoonCenter for Plant Science Innovation, Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.
Jorg SchwenderDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
John ShanklinDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, USA.
Stony Brook University · USBrookhaven National Laboratory · USUniversity of Nebraska–Lincoln · USUniversity of North Texas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modified fatty acids (mFA) have diverse uses; for example, cyclopropane fatty acids (CPA) are feedstocks for producing coatings, lubricants, plastics and cosmetics. The expression of mFA-producing enzymes in crop and model plants generally results in lower levels of mFA accumulation than in their natural-occurring source plants. Thus, to further our understanding of metabolic bottlenecks that limit mFA accumulation, we generated transgenic Camelina sativa lines co-expressing Escherichia coli cyclopropane synthase (EcCPS) and Sterculia foetida lysophosphatidic acid acyltransferase (SfLPAT). In contrast to transgenic CPA-accumulating Arabidopsis, CPA accumulation in camelina caused only minor changes in seed weight, germination rate, oil accumulation and seedling development. CPA accumulated to much higher levels in membrane than storage lipids, comprising more than 60% of total fatty acid in both phosphatidylcholine (PC) and phosphatidylethanolamine (PE) versus 26% in diacylglycerol (DAG) and 12% in triacylglycerol (TAG) indicating bottlenecks in the transfer of CPA from PC to DAG and from DAG to TAG. Upon co-expression of SfLPAT with EcCPS, di-CPA-PC increased by ~50% relative to lines expressing EcCPS alone with the di-CPA-PC primarily observed in the embryonic axis and mono-CPA-PC primarily in cotyledon tissue. EcCPS-SfLPAT lines revealed a redistribution of CPA from the sn-1 to sn-2 positions within PC and PE that was associated with a doubling of CPA accumulation in both DAG and TAG. The identification of metabolic bottlenecks in acyl transfer between site of synthesis (phospholipids) and deposition in storage oils (TAGs) lays the foundation for the optimizing CPA accumulation through directed engineering of oil synthesis in target crops.

Indexed as

AcyltransferasesBrassicaceaeCyclopropanesDiglyceridesEscherichia coli ProteinsFatty AcidsGerminationLipidsMethyltransferasesPlant OilsPlants, Genetically ModifiedSeedlingsSeedsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSterculiaTriglycerides1,2-diacylglycerol2-acylglycerophosphate acyltransferaseAcyltransferasescyclopropane fatty acidsCyclopropanescyclopropane synthetaseDiglyceridesEscherichia coli ProteinsFatty AcidsLipidsMethyltransferasesPlant OilsTriglyceridesCamelina sativacyclopropane fatty acidlipid metabolismlipid synthesistriacylglycerolunusual fatty acid

Identifiers

PMID28929610
PMCPMC5866947
OpenAlexW2754473690

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.