Evidence map›Paper›PMID 28929021›Full record

ArticlePeerJ2017

Allele specific expression and methylation in the bumblebee,

Zoë Lonsdale, Kate Lee, Maria Kiriakidu, Harindra Amarasinghe, Despina Nathanael, Catherine J O'Connor, Eamonn B Mallon

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Parent-of-origin effects, allele-specific expression, genomic imprinting and paternal manipulation in social insects.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  3. Article
  4. Epigenetic Molecular Mechanisms in Insects.Neotropical entomology · 2020
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Zoë LonsdaleDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Kate LeeBioinformatics and Biostatistics Support Hub (B/BASH), University of Leicester, Leicester, United Kingdom.
Maria KiriakiduDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Harindra AmarasingheAcademic Unit of Cancer Sciences, University of Southampton, Southampton, United Kingdom.
Despina NathanaelDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Catherine J O'ConnorSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Eamonn B MallonDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
University of Leicester · GBCardiff University · GBUniversity of Southampton · GB

Funding

Medical Research Council MR/K001744/1
6 · The paper itself

Abstract

The social hymenoptera are emerging as models for epigenetics. DNA methylation, the addition of a methyl group, is a common epigenetic marker. In mammals and flowering plants methylation affects allele specific expression. There is contradictory evidence for the role of methylation on allele specific expression in social insects. The aim of this paper is to investigate allele specific expression and monoallelic methylation in the bumblebee, Bombus terrestris. We found nineteen genes that were both monoallelically methylated and monoallelically expressed in a single bee. Fourteen of these genes express the hypermethylated allele, while the other five express the hypomethylated allele. We also searched for allele specific expression in twenty-nine published RNA-seq libraries. We found 555 loci with allele-specific expression. We discuss our results with reference to the functional role of methylation in gene expression in insects and in the as yet unquantified role of genetic cis effects in insect allele specific methylation and expression.

Indexed as

Allele specific expressionGenomic imprintingHymenopteraMethylation

Identifiers

PMID28929021
PMCPMC5600721
OpenAlexW2763645488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.