Evidence map›Paper›PMID 28928454›Full record

ArticleNature communications2017

A comprehensive characterization of PncA polymorphisms that confer resistance to pyrazinamide.

Adam N Yadon, Kashmeel Maharaj, John H Adamson, Yi-Pin Lai, James C Sacchettini, Thomas R Ioerger, Eric J Rubin, Alexander S Pym

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 119 citations in OpenAlex.

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  12. A simplified pyrazinamidase test forJournal of clinical microbiology · 2024
    Article
  13. Review
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  15. Article
  16. Prediction of pyrazinamide resistance inJAC-antimicrobial resistance · 2024
    Article
  17. Article
  18. Article
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Adam N YadonDepartment of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health, 665 Huntington Ave., Bldg 1, Rm 810, Boston, MA, 02115, USA.
Kashmeel MaharajAfrican Health Research Institute (AHRI), Nelson R. Mandela School of Medicine, K-RITH Tower Building, Level 3, 719 Umbilo Road, Durban, 4001, South Africa.
John H AdamsonAfrican Health Research Institute (AHRI), Nelson R. Mandela School of Medicine, K-RITH Tower Building, Level 3, 719 Umbilo Road, Durban, 4001, South Africa.
Yi-Pin LaiDepartment of Computer Science and Engineering, 3112 Texas A&M University, 301 H.R. Bright Building, College Station, TX, 77843, USA.
James C SacchettiniDepartment of Biochemistry and Biophysics, Texas A&M University, Interdisciplinary Life Sciences Building, 301 Old Main Dr., College Station, TX, 77843, USA.
Thomas R IoergerDepartment of Computer Science and Engineering, 3112 Texas A&M University, 301 H.R. Bright Building, College Station, TX, 77843, USA.
Eric J RubinDepartment of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health, 665 Huntington Ave., Bldg 1, Rm 810, Boston, MA, 02115, USA. erubin@hsph.harvard.edu.
Alexander S PymAfrican Health Research Institute (AHRI), Nelson R. Mandela School of Medicine, K-RITH Tower Building, Level 3, 719 Umbilo Road, Durban, 4001, South Africa. alex.pym@ahri.org.
Africa Health Research Institute · ZATexas A&M University · USHarvard University · US

Funding

Sequencing CoreU19AI109755 · NIAID · HARVARD MEDICAL SCHOOL · PI CHANDLER, DARRELL P, CULHANE, AEDIN C · 2014 to 2018
$29.1M
Fate of M. tuberculosis Antibiotic SurvivorsR21AI116142 · NIAID · KWAZULU-NATAL RESEARCH INSTITUTE TB-HIV · PI PYM, ALEXANDER S, RUBIN, ERIC J. · 2015 to 2016
$359k
NIAID NIH HHS R21 AI116142NIAID NIH HHS U19 AI109755
6 · The paper itself

Abstract

Tuberculosis chemotherapy is dependent on the use of the antibiotic pyrazinamide, which is being threatened by emerging drug resistance. Resistance is mediated through mutations in the bacterial gene pncA. Methods for testing pyrazinamide susceptibility are difficult and rarely performed, and this means that the full spectrum of pncA alleles that confer clinical resistance to pyrazinamide is unknown. Here, we performed in vitro saturating mutagenesis of pncA to generate a comprehensive library of PncA polymorphisms resultant from a single-nucleotide polymorphism. We then screened it for pyrazinamide resistance both in vitro and in an infected animal model. We identify over 300 resistance-conferring substitutions. Strikingly, these mutations map throughout the PncA structure and result in either loss of enzymatic activity and/or decrease in protein abundance. Our comprehensive mutational and screening approach should stand as a paradigm for determining resistance mutations and their mechanisms of action.The antibiotic pyrazinamide is central to tuberculosis treatment regimens, globally. Despite its efficacy, resistance to the drug is increasing. Here, Eric Rubin and colleagues characterise the genetic basis of pyrazinamide resistance.

Indexed as

Drug Resistance, BacterialPolymorphism, Single NucleotideAmidohydrolasesAntitubercular AgentsHumansMutationMycobacterium tuberculosisPyrazinamideAmidohydrolasesAntitubercular AgentsPncA protein, Mycobacterium tuberculosisPyrazinamide

Identifiers

PMID28928454
PMCPMC5605632
OpenAlexW2755491887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.