Evidence map›Paper›PMID 28928426›Full record

ArticleScientific reports2017

Cyanobacterial Sfp-type phosphopantetheinyl transferases functionalize carrier proteins of diverse biosynthetic pathways.

Guang Yang, Yi Zhang, Nicholas K Lee, Monica A Cozad, Sara E Kearney, Hendrik Luesch, Yousong Ding

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Heterologous production of cyanobacterial compounds.Journal of industrial microbiology & biotechnology · 2021
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guang YangDepartment of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL, 32610, USA.
Yi ZhangDepartment of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL, 32610, USA.
Nicholas K LeeDepartment of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL, 32610, USA.
Monica A CozadDepartment of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL, 32610, USA.
Sara E KearneyDepartment of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL, 32610, USA.
Hendrik LueschDepartment of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL, 32610, USA.
Yousong DingDepartment of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL, 32610, USA. yding@cop.ufl.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanobacteria produce structurally and functionally diverse polyketides, nonribosomal peptides and their hybrids. Sfp-type phosphopantetheinyl transferases (PPTases) are essential to the production of these compounds via functionalizing carrier proteins (CPs) of biosynthetic megaenzymes. However, cyanobacterial Sfp-type PPTases remain poorly characterized, posing a significant barrier to the exploitation of cyanobacteria for biotechnological and biomedical applications. Herein, we describe the detailed characterization of multiple cyanobacterial Sfp-type PPTases that were rationally selected. Biochemical characterization of these enzymes along with the prototypic enzyme Sfp from Bacillus subtilis demonstrated their varying specificities toward 11 recombinant CPs of different types of biosynthetic pathways from cyanobacterial and Streptomyces strains. Kinetic analysis further indicated that PPTases possess the higher binding affinity and catalytic efficiency toward their cognate CPs in comparison with noncognate substrates. Moreover, when chromosomally replacing the native PPTase gene of Synechocystis sp. PCC6803, two selected cyanobacterial PPTases and Sfp supported the growth of resulted mutants. Cell lysates of the cyanobacterial mutants further functionalized recombinant CP substrates. Collectively, these studies reveal the versatile catalysis of selected cyanobacterial PPTases and provide new tools to synthesize cyanobacterial natural products using in vitro and in vivo synthetic biology approaches.

Indexed as

Bacterial ProteinsBiosynthetic PathwaysCarrier ProteinsSynechocystisTransferases (Other Substituted Phosphate Groups)Bacillus subtilisPolyketidesStreptomycesBacterial ProteinsCarrier Proteinsphosphopantetheinyl transferasePolyketidesTransferases (Other Substituted Phosphate Groups)

Identifiers

PMID28928426
PMCPMC5605751

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.