Evidence map›Paper›PMID 28926596›Full record

ArticlePloS one2017

Bifurcation kinetics of drug uptake by Gram-negative bacteria.

David A Westfall, Ganesh Krishnamoorthy, David Wolloscheck, Rupa Sarkar, Helen I Zgurskaya, Valentin V Rybenkov

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

David A WestfallDepartment of Chemistry and Biochemistry, University of Oklahoma, Stephenson Parkway, Norman, OK, United States of America.
Ganesh KrishnamoorthyDepartment of Chemistry and Biochemistry, University of Oklahoma, Stephenson Parkway, Norman, OK, United States of America.
David WolloscheckDepartment of Chemistry and Biochemistry, University of Oklahoma, Stephenson Parkway, Norman, OK, United States of America.
Rupa SarkarDepartment of Chemistry and Biochemistry, University of Oklahoma, Stephenson Parkway, Norman, OK, United States of America.
Helen I ZgurskayaDepartment of Chemistry and Biochemistry, University of Oklahoma, Stephenson Parkway, Norman, OK, United States of America.
Valentin V RybenkovDepartment of Chemistry and Biochemistry, University of Oklahoma, Stephenson Parkway, Norman, OK, United States of America.ORCID http://orcid.org/0000-0002-5300-4369
University of Oklahoma · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell envelopes of many bacteria consist of two membranes studded with efflux transporters. Such organization protects bacteria from the environment and gives rise to multidrug resistance. We report a kinetic model that accurately describes the permeation properties of this system. The model predicts complex non-linear patterns of drug uptake complete with a bifurcation, which recapitulate the known experimental anomalies. We introduce two kinetic parameters, the efflux and barrier constants, which replace those of Michaelis and Menten for trans-envelope transport. Both compound permeation and efflux display transitions, which delineate regimes of efficient and inefficient efflux. The first transition is related to saturation of the transporter by the compound and the second one behaves as a bifurcation and involves saturation of the outer membrane barrier. The bifurcation was experimentally observed in live bacteria. We further found that active efflux of a drug can be orders of magnitude faster than its diffusion into a cell and that the efficacy of a drug depends both on its transport properties and therapeutic potency. This analysis reveals novel physical principles in the behavior of the cellular envelope, creates a framework for quantification of small molecule permeation into bacteria, and should invigorate structure-activity studies of novel antibiotics.

Indexed as

Models, BiologicalAnti-Bacterial AgentsBacterial Outer Membrane ProteinsBenzimidazolesDNAEscherichia coliGram-Negative BacteriaKineticsAnti-Bacterial AgentsBacterial Outer Membrane ProteinsBenzimidazolesbisbenzimide ethoxide trihydrochlorideDNA

Identifiers

PMID28926596
PMCPMC5604995
OpenAlexW2754578981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.