Evidence map›Paper›PMID 28925982›Full record

ArticleInternational journal of molecular sciences2017

Osmolyte-Like Stabilizing Effects of Low GdnHCl Concentrations on d-Glucose/d-Galactose-Binding Protein.

Alexander V Fonin, Alexandra D Golikova, Irina A Zvereva, Sabato D'Auria, Maria Staiano, Vladimir N Uversky, Irina M Kuznetsova, Konstantin K Turoverov

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Alexander V FoninInstitute of Cytology of the Russian Academy of Sciences, Laboratory of Structural Dynamics, Stability and Folding of Proteins, Tikhoretsky av. 4, 194064 St. Petersburg, Russia. alexfonin@incras.ru.ORCID 0000-0003-4469-2531
Alexandra D GolikovaSaint Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia. a.d.golikova@spbu.ru.
Irina A ZverevaSaint Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia. irina.zvereva@spbu.ru.
Sabato D'AuriaCNR, Institute of Food Science, via Roma 64, 83100 Avellino, Italy. sabato.dauria@cnr.it.
Maria StaianoCNR, Institute of Food Science, via Roma 64, 83100 Avellino, Italy. m.staiano@cnr.it.
Vladimir N UverskyDepartment of Molecular Medicine and Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida, 12901 Bruce B. Downs Blvd., Tampa, FL 33612, USA. vuversky@health.usf.edu.ORCID 0000-0002-4037-5857
Irina M KuznetsovaInstitute of Cytology of the Russian Academy of Sciences, Laboratory of Structural Dynamics, Stability and Folding of Proteins, Tikhoretsky av. 4, 194064 St. Petersburg, Russia. imk@incras.ru.
Konstantin K TuroverovInstitute of Cytology of the Russian Academy of Sciences, Laboratory of Structural Dynamics, Stability and Folding of Proteins, Tikhoretsky av. 4, 194064 St. Petersburg, Russia. kkt@incras.ru.
Institute of Cytology · RUInstitute of Food Science · ITSt Petersburg University · RUPeter the Great St. Petersburg Polytechnic University · RUUniversity of South Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of d-glucose/d-galactose-binding protein (GGBP) to reversibly interact with its ligands, glucose and galactose, makes this protein an attractive candidate for sensing elements of glucose biosensors. This potential is largely responsible for attracting researchers to study the conformational properties of this protein. Previously, we showed that an increase in the fluorescence intensity of the fluorescent dye 6-bromoacetyl-2-dimetylaminonaphtalene (BADAN) is linked to the holo-form of the GGBP/H152C mutant in solutions containing sub-denaturing concentrations of guanidine hydrochloride (GdnHCl). It was hypothesized that low GdnHCl concentrations might lead to compaction of the protein, thereby facilitating ligand binding. In this work, we utilize BADAN fluorescence spectroscopy, intrinsic protein UV fluorescence spectroscopy, and isothermal titration calorimetry (ITC) to show that the sub-denaturing GdnHCl concentrations possess osmolyte-like stabilizing effects on the structural dynamics, conformational stability, and functional activity of GGBP/H152C and the wild type of this protein (wtGGBP). Our data are consistent with the model where low GdnHCl concentrations promote a shift in the dynamic distribution of the protein molecules toward a conformational ensemble enriched in molecules with a tighter structure and a more closed conformation. This promotes the increase in the configurational complementarity between the protein and glucose molecules that leads to the increase in glucose affinity in both GGBP/H152C and wtGGBP.

Indexed as

Molecular Dynamics SimulationProtein DenaturationAmino Acid SubstitutionEscherichia coli ProteinsGuanidineMonosaccharide Transport ProteinsProtein StabilityEscherichia coli ProteinsGuanidinemglB protein, E coliMonosaccharide Transport Proteinsconformational ensemble">d-galactose-binding protein">d-glucose/fluorescent label BADANguanidine hydrochlorideosmolyte-like stabilizing effectprotein conformersprotein function

Identifiers

PMID28925982
PMCPMC5618657
OpenAlexW2756230439

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.