Evidence map›Paper›PMID 28925349›Full record

ArticleEpidemiology and infection2017

Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery.

J Moran-Gilad, A Rokney, D Danino, M Ferdous, F Alsana, M Baum, L Dukhan, V Agmon, E Anuka, L Valinsky and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Epidemiology and infection, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Increased detection of Shiga toxin-producingEpidemiology and infection · 2025
    Article
  2. Shiga Toxin-ProducingMicroorganisms · 2025
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Shiga toxin-producingAccess microbiology · 2019
    Article
  9. Article
  10. Genomic Epidemiology ofFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

J Moran-GiladFaculty of Health Sciences,Ben-Gurion University of the Negev,Beer-Sheva,Israel.
A RokneyCentral Laboratories,Public Health Services,Ministry of Health,Jerusalem,Israel.
D DaninoFaculty of Health Sciences,Ben-Gurion University of the Negev,Beer-Sheva,Israel.
M FerdousDepartment of Medical Microbiology,University of Groningen, University Medical Centre Groningen,Groningen,The Netherlands.
F AlsanaSouthern District Health Office,Ministry of Health,Beer-Sheva,Israel.
M BaumCentral Laboratories,Public Health Services,Ministry of Health,Jerusalem,Israel.
L DukhanSouthern District Health Office,Ministry of Health,Beer-Sheva,Israel.
V AgmonCentral Laboratories,Public Health Services,Ministry of Health,Jerusalem,Israel.
E AnukaCentral Laboratories,Public Health Services,Ministry of Health,Jerusalem,Israel.
L ValinskyCentral Laboratories,Public Health Services,Ministry of Health,Jerusalem,Israel.
R YishayDepartment of Laboratories,Public Health Services, Ministry of Health,Jerusalem,Israel.
I GrottoFaculty of Health Sciences,Ben-Gurion University of the Negev,Beer-Sheva,Israel.
J W A RossenEuropean Society for Clinical Microbiology and Infectious Diseases (ESCMID) Study Group for Genomic and Molecular Diagnostics (ESGMD),Basel,Switzerland.
M GdalevichFaculty of Health Sciences,Ben-Gurion University of the Negev,Beer-Sheva,Israel.
Israel Ministry of Health · ILBen-Gurion University of the Negev · ILUniversity Medical Center Groningen · NLUniversity of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga toxin-producing Escherichia coli (STEC) is a significant cause of gastrointestinal infection and the haemolytic-uremic syndrome (HUS). STEC outbreaks are commonly associated with food but animal contact is increasingly being implicated in its transmission. We report an outbreak of STEC affecting young infants at a nursery in a rural community (three HUS cases, one definite case, one probable case, three possible cases and five carriers, based on the combination of clinical, epidemiological and laboratory data) identified using culture-based and molecular techniques. The investigation identified repeated animal contact (animal farming and petting) as a likely source of STEC introduction followed by horizontal transmission. Whole genome sequencing (WGS) was used for real-time investigation of the incident and revealed a unique strain of STEC O26:H11 carrying stx2a and intimin. Following a public health intervention, no additional cases have occurred. This is the first STEC outbreak reported from Israel. WGS proved as a useful tool for rapid laboratory characterization and typing of the outbreak strain and informed the public health response at an early stage of this unusual outbreak.

Indexed as

Disease OutbreaksEscherichia coli InfectionsEscherichia coli ProteinsGenomicsHemolytic-Uremic SyndromeHumansInfantIsraelNurseries, InfantPhylogenyPublic HealthSequence Analysis, DNAShiga-Toxigenic Escherichia coliEscherichia coli ProteinsEscherichia colihaemolytic-uremic syndromeinvestigationoutbreakpaediatricShigatoxinwhole genome sequencing

Identifiers

PMID28925349
PMCPMC9152760
OpenAlexW2755822905

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.