Evidence map›Paper›PMID 28924834›Full record

ArticleApplied microbiology and biotechnology2017

Diversity of family GH46 chitosanases in Kitasatospora setae KM-6054.

Mina Zitouni, Pascal Viens, Mariana G Ghinet, Ryszard Brzezinski

Open access · hybridAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Mina ZitouniCentre d'Étude et de Valorisation de la Diversité Microbienne; Département de Biologie; Faculté des Sciences, Université de Sherbrooke, 2500, boul.de l'Université, Sherbrooke, Québec, J1K 2R1, Canada.
Pascal ViensCentre d'Étude et de Valorisation de la Diversité Microbienne; Département de Biologie; Faculté des Sciences, Université de Sherbrooke, 2500, boul.de l'Université, Sherbrooke, Québec, J1K 2R1, Canada.
Mariana G GhinetCentre d'Étude et de Valorisation de la Diversité Microbienne; Département de Biologie; Faculté des Sciences, Université de Sherbrooke, 2500, boul.de l'Université, Sherbrooke, Québec, J1K 2R1, Canada.
Ryszard BrzezinskiCentre d'Étude et de Valorisation de la Diversité Microbienne; Département de Biologie; Faculté des Sciences, Université de Sherbrooke, 2500, boul.de l'Université, Sherbrooke, Québec, J1K 2R1, Canada. Ryszard.Brzezinski@USherbrooke.ca.ORCID http://orcid.org/0000-0002-9090-5051
Université de Sherbrooke · CA

Funding

Natural Sciences and Engineering Research Council of Canada Discovery grant
6 · The paper itself

Abstract

The genome of Kitasatospora setae KM-6054, a soil actinomycete, has three genes encoding chitosanases belonging to GH46 family. The genes (csn1-3) were cloned in Streptomyces lividans and the corresponding enzymes were purified from the recombinant cultures. The csn2 clone yielded two proteins (Csn2BH and Csn2H) differing by the presence of a carbohydrate-binding domain. Sequence analysis showed that Csn1 and Csn2H were canonical GH46 chitosanases, while Csn3 resembled chitosanases from bacilli. The activity of the four chitosanases was tested in a variety of conditions and on diverse chitosan forms, including highly N-deacetylated chitosan or chitosan complexed with humic or polyphosphoric acid. Kinetic parameters were also determined. These tests unveiled the biochemical diversity among these chitosanases and the peculiarity of Csn3 compared with the other three enzymes. The observed biochemical diversity is discussed based on structural 3D models and sequence alignment. This is a first study of all the GH46 chitosanases produced by a single microbial strain.

Indexed as

Genetic VariationChitosanCloning, MolecularGlycoside HydrolasesRecombinant ProteinsSequence Analysis, DNAStreptomyces lividansStreptomycetaceaeChitosanchitosanaseGlycoside HydrolasesRecombinant ProteinsActinomycetesChitosanChitosanaseGenome miningGlycoside hydrolaseKitasatospora

Identifiers

PMID28924834
PMCPMC5635096
OpenAlexW2755935163

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.