ArticleScientific reports2017
Global transcriptome analysis and identification of genes involved in nutrients accumulation during seed development of rice tartary buckwheat (Fagopyrum Tararicum).
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed, 50 citations in OpenAlex.
- Dynamic transcriptome landscape of oat grain development.BMC genomics · 2025Article
- A dataset of tissue-specific gene expression dynamics during seed development in Brassica.Scientific data · 2025Article
- Identification of the Granule-Bound Starch Synthase (GBSS) Genes Involved in Amylose Biosynthesis in Tartary Buckwheat (Plants (Basel, Switzerland) · 2025Article
- QTL Mapping and Candidate Gene Analysis for Starch-Related Traits in Tartary Buckwheat (International journal of molecular sciences · 2024Article
- Plant Hormone Pathway Is Involved in Regulating the Embryo Development Mechanism of theInternational journal of molecular sciences · 2024Article
- New strategies to address world food security and elimination of malnutrition: future role of coarse cereals in human health.Frontiers in plant science · 2023Review
- Understanding the Potential Gene Regulatory Network of Starch Biosynthesis in Tartary Buckwheat by RNA-Seq.International journal of molecular sciences · 2022Article
- Comparative proteomic analyses of Tartary buckwheat (Fagopyrum tataricum) seeds at three stages of development.Functional & integrative genomics · 2022Article
- Transcriptome and Coexpression Network Analyses Provide In-Sights into the Molecular Mechanisms of Hydrogen Cyanide Synthesis during Seed Development in Common Vetch (International journal of molecular sciences · 2022Article
- Dynamic transcriptome analysis suggests the key genes regulating seed development and filling in Tartary buckwheat (Frontiers in genetics · 2022Article
- Integrative metabolomic and transcriptomic analyses reveal the mechanisms of Tibetan hulless barley grain coloration.Frontiers in plant science · 2022Article
- Transcriptome and metabolome analyses reveal the key genes related to grain size of big grain mutant in Tartary Buckwheat (Frontiers in plant science · 2022Article
- Integrated microRNA and transcriptome profiling reveal key miRNA-mRNA interaction pairs associated with seed development in Tartary buckwheat (Fagopyrum tataricum).BMC plant biology · 2021Article
- Mapping QTLs for 1000-grain weight and genes controlling hull type using SNP marker in Tartary buckwheat (Fagopyrum tataricum).BMC genomics · 2021Article
- Transcriptome Analysis Reveals Key Pathways and Candidate Genes Controlling Seed Development and Size in Ricebean (Frontiers in genetics · 2021Article
- Article
- Healthy and Resilient Cereals and Pseudo-Cereals for Marginal Agriculture: Molecular Advances for Improving Nutrient Bioavailability.Frontiers in genetics · 2020Review
- Charting oat (Avena sativa) embryo and endosperm transcription factor expression reveals differential expression of potential importance for seed development.Molecular genetics and genomics : MGG · 2019Article
- Transcriptome Analysis Reveals Key Seed-Development Genes in Common Buckwheat (International journal of molecular sciences · 2019Article
- Article
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Authors and funding
11 authors at 2 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Tartary buckwheat seeds are rich in various nutrients, such as storage proteins, starch, and flavonoids. To get a good knowledge of the transcriptome dynamics and gene regulatory mechanism during the process of seed development and nutrients accumulation, we performed a comprehensive global transcriptome analysis using rice tartary buckwheat seeds at different development stages, namely pre-filling stage, filling stage, and mature stage. 24 819 expressed genes, including 108 specifically expressed genes, and 11 676 differentially expressed genes (DEGs) were identified. qRT-PCR analysis was performed on 34 DEGs to validate the transcriptome data, and a good consistence was obtained. Based on their expression patterns, the identified DEGs were classified to eight clusters, and the enriched GO items in each cluster were analyzed. In addition, 633 DEGs related to plant hormones were identified. Furthermore, genes in the biosynthesis pathway of nutrients accumulation were analyzed, including 10, 20, and 23 DEGs corresponding to the biosynthesis of seed storage proteins, flavonoids, and starch, respectively. This is the first transcriptome analysis during seed development of tartary buckwheat. It would provide us a comprehensive understanding of the complex transcriptome dynamics during seed development and gene regulatory mechanism of nutrients accumulation.
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