Evidence map›Paper›PMID 28924037›Full record

ArticleThe Journal of biological chemistry2017

Intrinsically disordered sequences enable modulation of protein phase separation through distributed tyrosine motifs.

Yuan Lin, Simon L Currie, Michael K Rosen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 250 papers.

0numbers the graph read from it
0cells of the map it votes in
250citing papers in PubMed
14.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

250 citing papers in PubMed, 445 citations in OpenAlex.

  1. Review
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  8. Review
  9. Liquid-liquid phase separation in neural development.Cellular and molecular life sciences : CMLS · 2026
    Review
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190 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yuan LinFrom the Department of Biophysics, University of Texas Southwestern Medical Center and.
Simon L CurrieFrom the Department of Biophysics, University of Texas Southwestern Medical Center and.
Michael K RosenFrom the Department of Biophysics, University of Texas Southwestern Medical Center and michael.rosen@utsouthwestern.edu.
Howard Hughes Medical Institute · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

Liquid-liquid phase separation (LLPS) is thought to contribute to the establishment of many biomolecular condensates, eukaryotic cell structures that concentrate diverse macromolecules but lack a bounding membrane. RNA granules control RNA metabolism and comprise a large class of condensates that are enriched in RNA-binding proteins and RNA molecules. Many RNA granule proteins are composed of both modular domains and intrinsically disordered regions (IDRs) having low amino acid sequence complexity. Phase separation of these molecules likely plays an important role in the generation and stability of RNA granules. To understand how folded domains and IDRs can cooperate to modulate LLPS, we generated a series of engineered proteins. These were based on fusions of an IDR derived from the RNA granule protein FUS (fused in sarcoma) to a multivalent poly-Src homology 3 (SH3) domain protein that phase-separates when mixed with a poly-proline-rich-motif (polyPRM) ligand. We found that the wild-type IDR promotes LLPS of the polySH3-polyPRM system, decreasing the phase separation threshold concentration by 8-fold. Systematic mutation of tyrosine residues in Gly/Ser-Tyr-Gly/Ser motifs of the IDR reduced this effect, depending on the number but not on the position of these substitutions. Mutating all tyrosines to non-aromatic residues or phosphorylating the IDR raised the phase separation threshold above that of the unmodified polySH3-polyPRM pair. These results show that low-complexity IDRs can modulate LLPS both positively and negatively, depending on the degree of aromaticity and phosphorylation status. Our findings provide plausible mechanisms by which these sequences could alter RNA granule properties on evolutionary and cellular timescales.

Indexed as

Amino Acid SequenceHumansIntrinsically Disordered ProteinsPhase TransitionPhosphorylationPolypyrimidine Tract-Binding ProteinRecombinant Fusion ProteinsRNA-Binding Protein FUSsrc Homology DomainsTyrosineIntrinsically Disordered ProteinsPolypyrimidine Tract-Binding ProteinRecombinant Fusion ProteinsRNA-Binding Protein FUSTyrosinecooperativityfused in sarcoma (FUS)intrinsically disordered proteinliquid–liquid phase separationmultivalencyposttranslational modification (PTM)RNA granulesSrc homology 3 domain (SH3 domain)

Identifiers

PMID28924037
PMCPMC5704491
OpenAlexW2755486970

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.