Evidence map›Paper›PMID 28924016›Full record

ArticlePlant physiology2017

A Synthetic Glycan Microarray Enables Epitope Mapping of Plant Cell Wall Glycan-Directed Antibodies.

Colin Ruprecht, Max P Bartetzko, Deborah Senf, Pietro Dallabernadina, Irene Boos, Mathias C F Andersen, Toshihisa Kotake, J Paul Knox, Michael G Hahn, Mads H Clausen and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
34.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 154 citations in OpenAlex.

  1. Review
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  6. Arabinogalactan-proteins of the eusporangiate fernCell surface (Amsterdam, Netherlands) · 2025
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  10. Review
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  14. ACS omega · 2024
    Article
  15. Article
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  17. Article
  18. Review
  19. Black Poplar (Cells · 2023
    Article
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 5 countries.

Colin RuprechtDepartment of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany.
Max P BartetzkoDepartment of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany.
Deborah SenfDepartment of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany.
Pietro DallabernadinaDepartment of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany.
Irene BoosDepartment of Chemistry, Technical University of Denmark, Kemitorvet, 2800 Kgs. Lyngby, Denmark.ORCID http://orcid.org/0000-0002-8244-4312
Mathias C F AndersenDepartment of Chemistry, Technical University of Denmark, Kemitorvet, 2800 Kgs. Lyngby, Denmark.
Toshihisa KotakeGraduate School of Science and Engineering, Saitama University, Sakura-ku, Saitama 338-8570, Japan.ORCID http://orcid.org/0000-0002-1110-5006
J Paul KnoxCentre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom.ORCID http://orcid.org/0000-0002-9231-6891
Michael G HahnComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602-4712.ORCID http://orcid.org/0000-0003-2136-5191
Mads H ClausenDepartment of Chemistry, Technical University of Denmark, Kemitorvet, 2800 Kgs. Lyngby, Denmark.ORCID http://orcid.org/0000-0001-9649-1729
Fabian PfrengleDepartment of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany fabian.pfrengle@mpikg.mpg.de.ORCID http://orcid.org/0000-0003-2206-6636
Max Planck Institute of Colloids and Interfaces · DETechnical University of Denmark · DKSaitama University · JPUniversity of Georgia · USUniversity of Leeds · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the last three decades, more than 200 monoclonal antibodies have been raised against most classes of plant cell wall polysaccharides by different laboratories worldwide. These antibodies are widely used to identify differences in plant cell wall components in mutants, organ and tissue types, and developmental stages. Despite their importance and broad use, the precise binding epitope has been determined for only a few of these antibodies. Here, we use a plant glycan microarray equipped with 88 synthetic oligosaccharides to comprehensively map the epitopes of plant cell wall glycan-directed antibodies. Our results reveal the binding epitopes for 78 arabinogalactan-, rhamnogalacturonan-, xylan-, and xyloglucan-directed antibodies. We demonstrate that, with knowledge of the exact epitopes recognized by individual antibodies, specific glycosyl hydrolases can be implemented into immunological cell wall analyses, providing a framework to obtain structural information on plant cell wall glycans with unprecedented molecular precision.

Indexed as

Epitope MappingAntibodies, MonoclonalBrachypodiumCell WallGlycoside HydrolasesMicroarray AnalysisPolysaccharidesStaining and LabelingAntibodies, MonoclonalGlycoside HydrolasesPolysaccharides

Identifiers

PMID28924016
PMCPMC5664464
OpenAlexW2754322247

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.