Evidence map›Paper›PMID 28923947›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

TPC2 polymorphisms associated with a hair pigmentation phenotype in humans result in gain of channel function by independent mechanisms.

Yu-Kai Chao, Verena Schludi, Cheng-Chang Chen, Elisabeth Butz, O N Phuong Nguyen, Martin Müller, Jens Krüger, Claudia Kammerbauer, Manu Ben-Johny, Angelika M Vollmar and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

  1. The protein interaction networks of mucolipins and two-pore channels.Biochimica et biophysica acta. Molecular cell research · 2019
    Pooled it
  2. Article
  3. Allosteric switching of CaThe EMBO journal · 2026
    Article
  4. TPC1-dependent control of endosomal pH and transferrin uptake determines cellular iron status.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. A patient with TPCN2-related hypopigmentation and ocular phenotype.European journal of human genetics : EJHG · 2025
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. The ion channels of endomembranes.Physiological reviews · 2024
    Review
  15. Article
  16. Two-pore channels regulate endomembrane tension to enable remodeling and resolution of phagolysosomes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Yu-Kai ChaoDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
Verena SchludiDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
Cheng-Chang ChenDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
Elisabeth ButzDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
O N Phuong NguyenDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
Martin MüllerDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
Jens KrügerHigh-Performance and Cloud Computing Group, Zentrum für Datenverarbeitung, Universität Tübingen, 72076 Tübingen, Germany.
Claudia KammerbauerDepartment of Dermatology, Medical Faculty, Ludwig-Maximilians-Universität München, 80337 Munich, Germany.
Manu Ben-JohnyCalcium Signals Laboratory, Department of Biomedical Engineering, The Johns Hopkins University School of Medicine, Baltimore, MD 21205.
Angelika M VollmarDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
Carola BerkingDepartment of Dermatology, Medical Faculty, Ludwig-Maximilians-Universität München, 80337 Munich, Germany.
Martin BielDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany.
Christian A Wahl-SchottDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany; christian.wahl@cup.uni-muenchen.de christian.grimm@cup.uni-muenchen.de.
Christian GrimmDepartment of Pharmacy, Center for Drug Research and Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, 81377 Munich, Germany; christian.wahl@cup.uni-muenchen.de christian.grimm@cup.uni-muenchen.de.
Center for Integrated Protein Science Munich · DELudwig-Maximilians-Universität München · DEJohns Hopkins Medicine · USZentrum für Datenverarbeitung

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two-pore channels (TPCs) are endolysosomal cation channels. Two members exist in humans, TPC1 and TPC2. Functional roles associated with the ubiquitously expressed TPCs include VEGF-induced neoangiogenesis, LDL-cholesterol trafficking and degradation, physical endurance under fasting conditions, autophagy regulation, the acrosome reaction in sperm, cancer cell migration, and intracellular trafficking of pathogens such as Ebola virus or bacterial toxins (e.g., cholera toxin). In a genome-wide association study for variants associated with human pigmentation characteristics two coding variants of TPC2, rs35264875 (encoding M484L) and rs3829241 (encoding G734E), have been found to be associated with a shift from brown to blond hair color. In two recent follow-up studies a role for TPC2 in pigmentation has been further confirmed. However, these human polymorphic variants have not been functionally characterized until now. The development of endolysosomal patch-clamp techniques has made it possible to investigate directly ion channel activities and characteristics in isolated endolysosomal organelles. We applied this technique here to scrutinize channel characteristics of the polymorphic TPC2 variants in direct comparison with WT. We found that both polymorphisms lead to a gain of channel function by independent mechanisms. We next conducted a clinical study with more than 100 blond- and brown/black-haired individuals. We performed a genotype/phenotype analysis and subsequently isolated fibroblasts from WT and polymorphic variant carriers for endolysosomal patch-clamp experimentation to confirm key in vitro findings.

Indexed as

Polymorphism, GeneticCalcium ChannelsGenome-Wide Association StudyHairHEK293 CellsHumansPatch-Clamp TechniquesPhenotypePigmentationTwo-Pore ChannelsCalcium ChannelsTPCN1 protein, humanTPCN2 protein, humanTwo-Pore ChannelspigmentationpolymorphismTPCTPC2two-pore channel

Identifiers

PMID28923947
PMCPMC5642689
OpenAlexW2755544703

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.