Evidence map›Paper›PMID 28923826›Full record

ArticleThe EMBO journal2017

Structure of a VirD4 coupling protein bound to a VirB type IV secretion machinery.

Adam Redzej, Marta Ukleja, Sarah Connery, Martina Trokter, Catarina Felisberto-Rodrigues, Adam Cryar, Konstantinos Thalassinos, Richard D Hayward, Elena V Orlova, Gabriel Waksman

Abstract read
In one paragraph

Article in The EMBO journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. An ISFrontiers in microbiology · 2026
    Article
  7. Review
  8. Machine Learning-Based Characterization ofPathogens (Basel, Switzerland) · 2025
    Article
  9. Species-specific components of theInfection and immunity · 2025
    Article
  10. DecipheringBiotechnology notes (Amsterdam, Netherlands) · 2025
    Article
  11. Article
  12. Article
  13. Review
  14. Comparative Analysis of T4SS Molecular Architectures.Journal of microbiology and biotechnology · 2023
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Adam RedzejDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK.
Marta UklejaDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK.
Sarah ConneryDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK.
Martina TrokterDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK.
Catarina Felisberto-RodriguesDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK.
Adam CryarDivision of Biosciences, Institute of Structural and Molecular Biology, University College of London, London, UK.
Konstantinos ThalassinosDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK.
Richard D HaywardDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK.
Elena V OrlovaDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK e.orlova@mail.cryst.bbk.ac.uk g.waksman@mail.cryst.bbk.ac.uk.ORCID 0000-0003-3371-415X
Gabriel WaksmanDepartment of Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck, London, UK e.orlova@mail.cryst.bbk.ac.uk g.waksman@mail.cryst.bbk.ac.uk.ORCID 0000-0003-0708-2726

Funding

Biotechnology and Biological Sciences Research Council BB/E021042/1Biotechnology and Biological Sciences Research Council BB/F012705/1Medical Research Council MR/K012401/1Wellcome TrustWellcome Trust 098302Z/12/Z
6 · The paper itself

Abstract

Type IV secretion (T4S) systems are versatile bacterial secretion systems mediating transport of protein and/or DNA T4S systems are generally composed of 11 VirB proteins and 1 VirD protein (VirD4). The VirB1-11 proteins assemble to form a secretion machinery and a pilus while the VirD4 protein is responsible for substrate recruitment. The structure of VirD4 in isolation is known; however, its structure bound to the VirB1-11 apparatus has not been determined. Here, we purify a T4S system with VirD4 bound, define the biochemical requirements for complex formation and describe the protein-protein interaction network in which VirD4 is involved. We also solve the structure of this complex by negative stain electron microscopy, demonstrating that two copies of VirD4 dimers locate on both sides of the apparatus, in between the VirB4 ATPases. Given the central role of VirD4 in type IV secretion, our study provides mechanistic insights on a process that mediates the dangerous spread of antibiotic resistance genes among bacterial populations.

Indexed as

Agrobacterium tumefaciensConjugation, GeneticMacromolecular SubstancesMicroscopy, Electron, TransmissionProtein Interaction MapsType IV Secretion SystemsMacromolecular SubstancesType IV Secretion Systemsbacterial conjugationstructuretype 4 secretion systemVirD4

Identifiers

PMID28923826
PMCPMC5916273

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.