Evidence map›Paper›PMID 28922755›Full record

ArticleJournal of experimental botany2017

Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype.

Noé Cochetel, Frédéric Escudié, Sarah Jane Cookson, Zhanwu Dai, Philippe Vivin, Pierre-François Bert, Mindy Stephania Muñoz, Serge Delrot, Christophe Klopp, Nathalie Ollat and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
12.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  6. Article
  7. Root-Specific Expression ofFrontiers in plant science · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. How Do Novel M-Rootstock (Plants (Basel, Switzerland) · 2020
    Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Noé CochetelEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Frédéric EscudiéGenotoul Bioinformatics Platform, UR875 Mathematics and Applied Informatics of Toulouse, INRA, Castanet-Tolosan, France.
Sarah Jane CooksonEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Zhanwu DaiEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Philippe VivinEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Pierre-François BertEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Mindy Stephania MuñozDepartamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Alameda 340, PO Box 114-D, Santiago, Chile.
Serge DelrotEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Christophe KloppGenotoul Bioinformatics Platform, UR875 Mathematics and Applied Informatics of Toulouse, INRA, Castanet-Tolosan, France.
Nathalie OllatEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Virginie LauvergeatEGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, 33140 Villenave d'Ornon, France.
Université de Bordeaux · FRPontificia Universidad Católica de Chile · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In many fruit species, including grapevine, grafting is used to improve scion productivity and quality and to adapt the plant to environmental conditions. However, the mechanisms underlying the rootstock control of scion development are still poorly understood. The ability of rootstocks to regulate nitrogen uptake and assimilation may contribute to this control. A split-root system was used to grow heterografted grapevines and to investigate the molecular responses to changes in nitrate availability of two rootstocks known to affect scion growth differently. Transcriptome profiling by RNA sequencing was performed on root samples collected 3 and 24 h after nitrogen supply. The results demonstrated a common response involving nitrogen-related genes, as well as a more pronounced transcriptomic reprogramming in the genotype conferring the lower scion growth. A weighted gene co-expression network analysis allowed the identification of co-regulated gene modules, suggesting a role for nitrate transporter 2 family genes and some transcription factors as main actors controlling this genotype-dependent response to heterogeneous nitrogen supply. The relationship between nitrate, ethylene, and strigolactone hormonal pathways was found to differ between the two genotypes. These findings indicated that the genotypes responded differently to heterogeneous nitrogen availability, and this may contribute to their contrasting effect on scion growth.

Indexed as

Gene Expression Regulation, PlantSignal TransductionTranscriptomeGene Expression ProfilingNitratesNitrogenPlant RootsVitisNitratesNitrogenGrafted plantsgrapevinenitrateRNA-seqrootstockssplit-root systemtranscriptome

Identifiers

PMID28922755
PMCPMC5854021
OpenAlexW2735008009

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.