Evidence map›Paper›PMID 28922417›Full record

ArticlePLoS genetics2017

Lingering single-strand breaks trigger Rad51-independent homology-directed repair of collapsed replication forks in the polynucleotide kinase/phosphatase mutant of fission yeast.

Arancha Sanchez, Mariana C Gadaleta, Oliver Limbo, Paul Russell

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Deficiency ofZoological research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Arancha SanchezDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, United States of America.
Mariana C GadaletaDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, United States of America.
Oliver LimboDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, United States of America.ORCID http://orcid.org/0000-0003-1686-1414
Paul RussellDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, United States of America.ORCID http://orcid.org/0000-0001-8575-1046
Scripps Research Institute · US

Funding

Studies of the DNA damage checkpointsR01CA077325 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI RUSSELL, PAUL · 1998 to 2017
$7.1M
Studies of the DNA Replication CheckpointR01GM059447 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI RUSSELL, PAUL · 1999 to 2016
$6.0M
Mre11/Rad50 Structural Biology for DNA Damage ResponsesR01CA117638 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI RUSSELL, PAUL, TAINER, JOHN A. · 2005 to 2019
$5.6M
NCI NIH HHS R01 CA077325NCI NIH HHS R01 CA117638NIGMS NIH HHS R01 GM059447
6 · The paper itself

Abstract

The DNA repair enzyme polynucleotide kinase/phosphatase (PNKP) protects genome integrity by restoring ligatable 5'-phosphate and 3'-hydroxyl termini at single-strand breaks (SSBs). In humans, PNKP mutations underlie the neurological disease known as MCSZ, but these individuals are not predisposed for cancer, implying effective alternative repair pathways in dividing cells. Homology-directed repair (HDR) of collapsed replication forks was proposed to repair SSBs in PNKP-deficient cells, but the critical HDR protein Rad51 is not required in PNKP-null (pnk1Δ) cells of Schizosaccharomyces pombe. Here, we report that pnk1Δ cells have enhanced requirements for Rad3 (ATR/Mec1) and Chk1 checkpoint kinases, and the multi-BRCT domain protein Brc1 that binds phospho-histone H2A (γH2A) at damaged replication forks. The viability of pnk1Δ cells depends on Mre11 and Ctp1 (CtIP/Sae2) double-strand break (DSB) resection proteins, Rad52 DNA strand annealing protein, Mus81-Eme1 Holliday junction resolvase, and Rqh1 (BLM/WRN/Sgs1) DNA helicase. Coupled with increased sister chromatid recombination and Rad52 repair foci in pnk1Δ cells, these findings indicate that lingering SSBs in pnk1Δ cells trigger Rad51-independent homology-directed repair of collapsed replication forks. From these data, we propose models for HDR-mediated tolerance of persistent SSBs with 3' phosphate in pnk1Δ cells.

Indexed as

Checkpoint Kinase 1Checkpoint Kinase 2DNA-Binding ProteinsDNA Breaks, Double-StrandedDNA Breaks, Single-StrandedDNA DamageDNA RepairDNA Repair EnzymesDNA ReplicationEndonucleasesExodeoxyribonucleasesHolliday Junction ResolvasesHumansMutationPolynucleotide 5'-Hydroxyl-KinaseRad51 RecombinaseBrc1 protein, S pombeCheckpoint Kinase 1Checkpoint Kinase 2Chk1 protein, S pombeCtp1 protein, S pombeDNA-Binding ProteinsDNA Repair EnzymesEme1 protein, S pombeEndonucleasesExodeoxyribonucleasesHolliday Junction ResolvasesMre11 protein, S pombeMUS81 protein, S pombePolynucleotide 5'-Hydroxyl-Kinaserad3 protein, S pombeRad51 Recombinaserad52 protein, S pombeSchizosaccharomyces pombe Proteins

Identifiers

PMID28922417
PMCPMC5626526
OpenAlexW2951340563

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.