Evidence map›Paper›PMID 28922399›Full record

ArticlePLoS computational biology2017

Probing eukaryotic cell mechanics via mesoscopic simulations.

Kirill Lykov, Yasaman Nematbakhsh, Menglin Shang, Chwee Teck Lim, Igor V Pivkin

Abstract read
In one paragraph

Article in PLoS computational biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
  7. SEMAPL bioengineering · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Biophysical Approaches for Applying and Measuring Biological Forces.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  13. Review
  14. Article
  15. Article
  16. Nonlinear Elastic and Inelastic Properties of Cells.Journal of biomechanical engineering · 2020
    Review
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kirill LykovInstitute of Computational Science, Faculty of Informatics, USI Lugano, Lugano, Switzerland.
Yasaman NematbakhshNUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore, Singapore.
Menglin ShangBioSystems and Micromechanics (BioSyM) IRG, Singapore-MIT Alliance for Research and Technology (SMART) Centre, Singapore, Singapore.
Chwee Teck LimNUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore, Singapore.
Igor V PivkinInstitute of Computational Science, Faculty of Informatics, USI Lugano, Lugano, Switzerland.ORCID http://orcid.org/0000-0002-9593-5217

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell mechanics has proven to be important in many biological processes. Although there is a number of experimental techniques which allow us to study mechanical properties of cell, there is still a lack of understanding of the role each sub-cellular component plays during cell deformations. We present a new mesoscopic particle-based eukaryotic cell model which explicitly describes cell membrane, nucleus and cytoskeleton. We employ Dissipative Particle Dynamics (DPD) method that provides us with the unified framework for modeling of a cell and its interactions in the flow. Data from micropipette aspiration experiments were used to define model parameters. The model was validated using data from microfluidic experiments. The validated model was then applied to study the impact of the sub-cellular components on the cell viscoelastic response in micropipette aspiration and microfluidic experiments.

Indexed as

Models, BiologicalBiomechanical PhenomenaCell LineCell MembraneCell NucleusComputational BiologyCytoskeletonElasticityEpithelial CellsHumansMicrofluidicsMicromanipulationViscosity

Identifiers

PMID28922399
PMCPMC5619828

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.