Evidence map›Paper›PMID 28920956›Full record

ArticleNature medicine2017

Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome.

Brian S Johnson, Ying-Tao Zhao, Maria Fasolino, Janine M Lamonica, Yoon Jung Kim, George Georgakilas, Kathleen H Wood, Daniel Bu, Yue Cui, Darren Goffin and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Brian S JohnsonDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.ORCID http://orcid.org/0000-0003-3711-5920
Ying-Tao ZhaoDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Maria FasolinoDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Janine M LamonicaDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Yoon Jung KimDepartment of Biological Sciences and Center for Systems Biology, University of Texas at Dallas, Richardson, Texas, USA.
George GeorgakilasDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Kathleen H WoodDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Daniel BuDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Yue CuiDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Darren GoffinDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Golnaz VahediDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Tae Hoon KimDepartment of Biological Sciences and Center for Systems Biology, University of Texas at Dallas, Richardson, Texas, USA.
Zhaolan ZhouDepartment of Genetics, University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
University of Pennsylvania · USThe University of Texas at Dallas · US

Funding

ZINC FINGER PROTEINS IN EARLY KIDNEY DEVELOPMENTP01DK049210 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI AHIMA, REXFORD S. · 1995 to 2016
$26.9M
The Intellectual and Developmental Disabilities Research Center at CHOP/PennU54HD086984 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI ROBINSON, MICHAEL BYRNE, SCHULTZ, ROBERT THOMAS · 2016 to 2020
$6.3M
Understanding the Pathogenic Mechanisms of Rett SyndromeR01NS081054 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Zhaolan Zhou · 2013 to 2026
$5.6M
Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SAHIN, MUSTAFA · 2016 to 2020
$5.2M
Defining the Epigenetic Architecture Associated with Early-Life StressR01MH091850 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI ZHOU, ZHAOLAN · 2010 to 2014
$2.4M
Understanding the Epigenetic Mechanisms Underlying Stress-related Neuropsychiatric DisordersR01MH111719 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI ZHOU, ZHAOLAN · 2018 to 2021
$2.2M
Analysis of Higher Order Chromatin Structures in Normal and Cancer EpigenomesR01CA140485 · NCI · YALE UNIVERSITY · PI KIM, TAE HOON · 2010 to 2014
$1.6M
Nuclear, Genomic and Molecular Regulation of Type I Interferon TranscriptionR21AI107067 · NIAID · YALE UNIVERSITY · PI KIM, TAE HOON · 2013 to 2014
$426k
Super-enhancer structure defines a signature of inflammatory bowel disease (IBD)K22AI112570 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI VAHEDI, GOLNAZ · 2015 to 2016
$266k
NCI NIH HHS R01 CA140485NIAID NIH HHS K22 AI112570NIAID NIH HHS R21 AI107067NICHD NIH HHS U54 HD086984NICHD NIH HHS U54 HD090255NIDDK NIH HHS P01 DK049210NIMH NIH HHS R01 MH091850NIMH NIH HHS R01 MH111719NINDS NIH HHS R01 NS081054
6 · The paper itself

Abstract

Mutations in MECP2 cause Rett syndrome (RTT), an X-linked neurological disorder characterized by regressive loss of neurodevelopmental milestones and acquired psychomotor deficits. However, the cellular heterogeneity of the brain impedes an understanding of how MECP2 mutations contribute to RTT. Here we developed a Cre-inducible method for cell-type-specific biotin tagging of MeCP2 in mice. Combining this approach with an allelic series of knock-in mice carrying frequent RTT-associated mutations (encoding T158M and R106W) enabled the selective profiling of RTT-associated nuclear transcriptomes in excitatory and inhibitory cortical neurons. We found that most gene-expression changes were largely specific to each RTT-associated mutation and cell type. Lowly expressed cell-type-enriched genes were preferentially disrupted by MeCP2 mutations, with upregulated and downregulated genes reflecting distinct functional categories. Subcellular RNA analysis in MeCP2-mutant neurons further revealed reductions in the nascent transcription of long genes and uncovered widespread post-transcriptional compensation at the cellular level. Finally, we overcame X-linked cellular mosaicism in female RTT models and identified distinct gene-expression changes between neighboring wild-type and mutant neurons, providing contextual insights into RTT etiology that support personalized therapeutic interventions.

Indexed as

AllelesAnimalsBiotinBiotinylationCerebral CortexFemaleGene Expression ProfilingGene Knock-In TechniquesGenotypeMethyl-CpG-Binding Protein 2MiceMosaicismMutationMutation, MissenseNeuronsPhenotypeBiotinMecp2 protein, mouseMethyl-CpG-Binding Protein 2

Identifiers

PMID28920956
PMCPMC5630512
OpenAlexW2755967972

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.