Evidence map›Paper›PMID 28918073›Full record

ArticleJournal of virological methods2017

A directed evolution approach to select for novel Adeno-associated virus capsids on an HIV-1 producer T cell line.

Dawn P Wooley, Priyanka Sharma, John R Weinstein, Poornima Kotha Lakshmi Narayan, David V Schaffer, Katherine J D A Excoffon

Open access · greenAbstract read
In one paragraph

Article in Journal of virological methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Optimal delivery of RNA interference by viral vectors for cancer therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Dawn P WooleyNeuroscience, Cell Biology, and Physiology, Wright State University, 3640 Colonel Glenn Highway, Dayton, OH, 45435, USA. Electronic address: dawn.wooley@wright.edu.
Priyanka SharmaBiological Sciences, Wright State University, Dayton, OH, 45435, USA. Electronic address: priyanka.sharma@wright.edu.
John R WeinsteinChemical and Biomolecular Engineering, University of California, Berkeley, CA, 94720, USA. Electronic address: john.weinstein@ucsf.edu.
Poornima Kotha Lakshmi NarayanBiological Sciences, Wright State University, Dayton, OH, 45435, USA. Electronic address: pnarayan@lrri.org.
David V SchafferChemical and Biomolecular Engineering, University of California, Berkeley, CA, 94720, USA. Electronic address: schaffer@berkeley.edu.
Katherine J D A ExcoffonBiological Sciences, Wright State University, Dayton, OH, 45435, USA. Electronic address: katherine.excoffon@wright.edu.
Wright State University · USUniversity of California, Berkeley · US

Funding

Molecular evolution of AAV vectors for anti-HIV gene therapyR21AI093268 · NIAID · WRIGHT STATE UNIVERSITY · PI EXCOFFON, KATHERINE JULIE · 2011 to 2012
$411k
NIAID NIH HHS R21 AI093268
6 · The paper itself

Abstract

A directed evolution approach was used to select for Adeno-associated virus (AAV) capsids that would exhibit more tropism toward an HIV-1 producer T cell line with the long-term goal of developing improved gene transfer vectors. A library of AAV variants was used to infect H9 T cells previously infected or uninfected by HIV-1 followed by AAV amplification with wild-type adenovirus. Six rounds of biological selection were performed, including negative selection and diversification after round three. The H9 T cells were successfully infected with all three wild-type viruses (AAV, adenovirus, and HIV-1). Four AAV cap mutants best representing the small number of variants emerging after six rounds of selection were chosen for further study. These mutant capsids were used to package an AAV vector and subsequently used to infect H9 cells that were previously infected or uninfected by HIV-1. A quantitative polymerase chain reaction assay was performed to measure cell-associated AAV genomes. Two of the four cap mutants showed a significant increase in the amount of cell-associated genomes as compared to wild-type AAV2. This study shows that directed evolution can be performed successfully to select for mutants with improved tropism for a T cell line in the presence of HIV-1.

Indexed as

CapsidCell LineDependovirusDirected Molecular EvolutionGene LibraryGenetic VectorsGene Transfer TechniquesHeLa CellsHIV-1HumansMutationT-LymphocytesViral TropismVirus UncoatingAAVDirected evolutionGene transferHIV-1T cell

Identifiers

PMID28918073
PMCPMC6112236
OpenAlexW2755068504

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.