Evidence map›Paper›PMID 28916913›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2017

Centromeric enrichment of LINE-1 retrotransposons and its significance for the chromosome evolution of Phyllostomid bats.

Cibele Gomes de Sotero-Caio, Diogo Cavalcanti Cabral-de-Mello, Merilane da Silva Calixto, Guilherme Targino Valente, Cesar Martins, Vilma Loreto, Maria José de Souza, Neide Santos

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Cibele Gomes de Sotero-CaioDepartamento de Genética, Laboratório de Genética e Citogenética Animal e Humana, UFPE-Universidade Federal de Pernambuco, Av. da Engenharia s/n; Cidade Universitária, Recife, PE, CEP:50740-600, Brazil. cibele.caio@gmail.com.
Diogo Cavalcanti Cabral-de-MelloDepartamento de Biologia, Grupo de Estudos em Citogenômica e Evolução Animal, UNESP-Universidade Estadual Paulista, Instituto de Biociências, Rio Claro, SP, Brazil.
Merilane da Silva CalixtoDepartamento de Genética, Laboratório de Genética e Citogenética Animal e Humana, UFPE-Universidade Federal de Pernambuco, Av. da Engenharia s/n; Cidade Universitária, Recife, PE, CEP:50740-600, Brazil.
Guilherme Targino ValenteDepartamento de Bioprocessos e Biotecnologia da Faculdade de Ciências Agronômicas, UNESP-Universidade Estadual Paulista, Botucatu, SP, Brazil.
Cesar MartinsDepartamento de Morfologia, Laboratório Genômica Integrativa, UNESP-Universidade Estadual Paulista, Botucatu, SP, Brazil.
Vilma LoretoDepartamento de Genética, Laboratório de Genética e Citogenética Animal e Humana, UFPE-Universidade Federal de Pernambuco, Av. da Engenharia s/n; Cidade Universitária, Recife, PE, CEP:50740-600, Brazil.
Maria José de SouzaDepartamento de Genética, Laboratório de Genética e Citogenética Animal e Humana, UFPE-Universidade Federal de Pernambuco, Av. da Engenharia s/n; Cidade Universitária, Recife, PE, CEP:50740-600, Brazil.
Neide SantosDepartamento de Genética, Laboratório de Genética e Citogenética Animal e Humana, UFPE-Universidade Federal de Pernambuco, Av. da Engenharia s/n; Cidade Universitária, Recife, PE, CEP:50740-600, Brazil.
Universidade Federal de Pernambuco · BRUniversidade Estadual Paulista (Unesp) · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite their ubiquitous incidence, little is known about the chromosomal distribution of long interspersed elements (LINEs) in mammalian genomes. Phyllostomid bats, characterized by lineages with distinct trends of chromosomal evolution coupled with remarkable ecological and taxonomic diversity, represent good models to understand how these repetitive sequences contribute to the evolution of genome architecture and its link to lineage diversification. To test the hypothesis that LINE-1 sequences were important modifiers of bat genome architecture, we characterized the distribution of LINE-1-derived sequences on genomes of 13 phyllostomid species within a phylogenetic framework. We found massive accumulation of LINE-1 elements in the centromeres of most species: a rare phenomenon on mammalian genomes. We hypothesize that expansion of these elements has occurred early in the radiation of phyllostomids and recurred episodically. LINE-1 expansions on centromeric heterochromatin probably spurred chromosomal change before the radiation of phyllostomids into the extant 11 subfamilies and contributed to the high degree of karyotypic variation observed among different lineages. Understanding centromere architecture in a variety of taxa promises to explain how lineage-specific changes on centromere structure can contribute to karyotypic diversity while not disrupting functional constraints for proper cell division.

Indexed as

Chromosomes, MammalianEvolution, MolecularLong Interspersed Nucleotide ElementsAnimalsCentromereChiropteraHeterochromatinIn Situ Hybridization, FluorescenceKaryotypePhylogenyRepetitive Sequences, Nucleic AcidRetroelementsSequence Analysis, DNAHeterochromatinRetroelementscentromereChiropterakaryotypenon-LTRPhyllostomidaetransposable element

Identifiers

PMID28916913
OpenAlexW2754419228

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.