Evidence map›Paper›PMID 28916751›Full record

ArticleNature communications2017

Understanding CRY2 interactions for optical control of intracellular signaling.

Liting Duan, Jen Hope, Qunxiang Ong, Hsin-Ya Lou, Namdoo Kim, Comfrey McCarthy, Victor Acero, Michael Z Lin, Bianxiao Cui

Abstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Chemical reviews · 2026
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Light-Inducible Deformation of Mitochondria in Live Cells.Methods in molecular biology (Clifton, N.J.) · 2025
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Liting DuanDepartment of Chemistry, Stanford University, Stanford, California, 94305, USA.
Jen HopeDepartment of Chemistry, Stanford University, Stanford, California, 94305, USA.
Qunxiang OngDepartment of Chemistry, Stanford University, Stanford, California, 94305, USA.
Hsin-Ya LouDepartment of Chemistry, Stanford University, Stanford, California, 94305, USA.
Namdoo KimDepartment of Bioengineering, Stanford University, Stanford, California, 94305, USA.
Comfrey McCarthyDepartment of Psychology, Northeastern University, Boston, Massachusetts, 02115, USA.
Victor AceroDepartment of Engineering Science, Pennsylvania State University, State College, Pennsylvania, 16802, USA.
Michael Z LinDepartment of Bioengineering, Stanford University, Stanford, California, 94305, USA. mzlin@stanford.edu.ORCID http://orcid.org/0000-0002-0492-1961
Bianxiao CuiDepartment of Chemistry, Stanford University, Stanford, California, 94305, USA. bcui@stanford.edu.

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI SCOTT, MATTHEW P. · 2013 to 2017
$10.9M
Engineering external forces for manipulating cargo transport in live neuronsDP2NS082125 · NINDS · STANFORD UNIVERSITY · PI CUI, BIANXIAO · 2012 to 2012
$2.4M
NIGMS NIH HHS P50 GM107615NINDS NIH HHS DP2 NS082125
6 · The paper itself

Abstract

Arabidopsis cryptochrome 2 (CRY2) can simultaneously undergo light-dependent CRY2-CRY2 homo-oligomerization and CRY2-CIB1 hetero-dimerization, both of which have been widely used to optically control intracellular processes. Applications using CRY2-CIB1 interaction desire minimal CRY2 homo-oligomerization to avoid unintended complications, while those utilizing CRY2-CRY2 interaction prefer robust homo-oligomerization. However, selecting the type of CRY2 interaction has not been possible as the molecular mechanisms underlying CRY2 interactions are unknown. Here we report CRY2-CIB1 and CRY2-CRY2 interactions are governed by well-separated protein interfaces at the two termini of CRY2. N-terminal charges are critical for CRY2-CIB1 interaction. Moreover, two C-terminal charges impact CRY2 homo-oligomerization, with positive charges facilitating oligomerization and negative charges inhibiting it. By engineering C-terminal charges, we develop CRY2high and CRY2low with elevated or suppressed oligomerization respectively, which we use to tune the levels of Raf/MEK/ERK signaling. These results contribute to our understanding of the mechanisms underlying light-induced CRY2 interactions and enhance the controllability of CRY2-based optogenetic systems.Cryptochrome 2 (CRY2) can form light-regulated CRY2-CRY2 homo-oligomers or CRY2-CIB1 hetero-dimers, but modulating these interactions is difficult owing to the lack of interaction mechanism. Here the authors identify the interactions facilitating homo-oligomers and introduce mutations to create low and high oligomerization versions.

Indexed as

Amino Acid MotifsArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCryptochromesDimerizationLightOptogeneticsProtein BindingSignal TransductionArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCIB1 protein, ArabidopsisCRY2 protein, ArabidopsisCryptochromes

Identifiers

PMID28916751
PMCPMC5601944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.