ArticleProceedings of the National Academy of Sciences of the United States of America2017
Need for speed in accurate whole-genome data analysis: GENALICE MAP challenges BWA/GATK more than PEMapper/PECaller and Isaac.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
13 citing papers in PubMed.
- Fast and accurate DNASeq variant calling workflow composed of LUSH toolkit.Human genomics · 2024Article
- Biostatistical Aspects of Whole Genome Sequencing Studies: Preprocessing and Quality Control.Biometrical journal. Biometrische Zeitschrift · 2024Article
- The genetic basis of early-onset hereditary ataxia in Iran: results of a national registry of a heterogeneous population.Human genomics · 2024Article
- Widespread genetic heterogeneity of human ribosomal RNA genes.RNA (New York, N.Y.) · 2022Article
- Added Value of Clinical Sequencing: WGS-Based Profiling of Pharmacogenes.International journal of molecular sciences · 2020Article
- CNV Radar: an improved method for somatic copy number alteration characterization in oncology.BMC bioinformatics · 2020Article
- Variant filtering, digenic variants, and other challenges in clinical sequencing: a lesson from fibrillinopathies.Clinical genetics · 2020Article
- GTX.Digest.VCF: an online NGS data interpretation system based on intelligent gene ranking and large-scale text mining.BMC medical genomics · 2019Article
- Recommendations for performance optimizations when using GATK3.8 and GATK4.BMC bioinformatics · 2019Article
- elPrep 4: A multithreaded framework for sequence analysis.PloS one · 2019Article
- Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy.Frontiers in genetics · 2019Article
- A characterization of postzygotic mutations identified in monozygotic twins.Human mutation · 2018Article
- Reply to Plüss et al.: The strength of PEMapper/PECaller lies in unbiased calling using large sample sizes.Proceedings of the National Academy of Sciences of the United States of America · 2017Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.